NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315322_10032639

Scaffold Ga0315322_10032639


Overview

Basic Information
Taxon OID3300031766 Open in IMG/M
Scaffold IDGa0315322_10032639 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3879
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006845Metagenome / Metatranscriptome363Y
F013088Metagenome / Metatranscriptome274Y
F018155Metagenome / Metatranscriptome236Y
F058166Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0315322_100326392F058166GGAGMDILGGMSNSSESQQVYLAFKTADQQFFVNGQTPIDFKYLQLDPATFKSGWGRYAGEYQYVWDDKFGNASEKPADDWKRAFSCCVMPHGHDHALIWSRFTFAESSAFNKILSSFWNQMDANSNSLPVVEYKGSKEIQVGIGRSSELSFEFSKFAPRFDNFVIPAFYDKENEPVEDTFKSPNDGLAEKVQEMVDKNELSDDDIPF
Ga0315322_100326393F006845N/AMDLNSYLLQEDFEEFCRKAYERIQIACDVFNITNDEDYYSFKERCYTQLETDYLNSIERTIH
Ga0315322_100326395F018155AGGAMGQNSKAVAKRREELKAEKLDKQVAYYYFQKGAGTHYREIQYASGKIVRTDFDA
Ga0315322_100326396F013088AGGAGMDEKTKKALWISEELHKEIKIFAIQNNMTIESASQMVLKLGMCSYKDSNGSK

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