NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308401_1000117

Scaffold Ga0308401_1000117


Overview

Basic Information
Taxon OID3300031767 Open in IMG/M
Scaffold IDGa0308401_1000117 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23704
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (93.55%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Associated Families11

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F004307Metagenome / Metatranscriptome444Y
F004791Metagenome / Metatranscriptome423Y
F005028Metagenome / Metatranscriptome414Y
F005302Metagenome / Metatranscriptome405Y
F012577Metagenome / Metatranscriptome279Y
F014738Metagenome / Metatranscriptome260Y
F018115Metagenome / Metatranscriptome236Y
F032180Metagenome / Metatranscriptome180Y
F067304Metagenome / Metatranscriptome125Y
F105262Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0308401_100011710F004791AGGAGGMDKPAEIYDTEALRVDRSALTIREAASVLNNELTAPVVARLVRKAIGTQADRLPLKALKRVYERVLPQIFEPDEAVRSRVAGLTPAVGEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDILNEPYAAAALLLKKIFDSVAEEGNE
Ga0308401_100011711F067304N/AMRRDQRLMPPLRAQRRKMLRDAPERLTVKRVGRAVVDVSAQHQFCVRGGQRREVEQT
Ga0308401_100011714F012577GAGGMLVAITRPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPGYARSGVMTQIGDELIVYCTQLSRTVWRGQIERIEEAKDGNITWHALGFGALQRDARISVVQNMFDMTRWQPVGTGFMTGSGYDSRGDLWEYEVVATGGTPRVQIRTKKTFTITNTTLFFLVYLYDQPERYGKISTSENISIFSAVSTGLADGVWVAPVTAIPQPNAYTLTLGTFTGISVNGNVPSSNCVGWVVGIRAAGNEIVAGTTSVTFHAMINNPAFGGINSSLLSSALIERGGCCDVFLPEFAGIMIEKTDANLREIVEQNNDDFVQVRYYHKRFLRDRPRPTIDFRADSTLVWRFPEATRVVDISKAPNRVYGQYRGYWTDHLTATTSVASLESRRQLARRLASVGEYGSKAIAEARRNEAAVALDRQIAPLTVELDNSRYELMTREGVTVPNWAADVSDYVIVPGYFRNAKITSRVITRERTTYTVSFNPDDFVTVLR
Ga0308401_100011718F014738GGAGGMKLDILLPVSAFALAFVHPDAAQVAATAVLVLLVTRIERGRRARKKRSAPVAP
Ga0308401_100011726F004307AGGAGMFKELIHNGSRSERPELNGAYIGRFLGVKERQRPTFETRLSPEPTYEEVFVFEFEVVDPELDAPLRVSRWVRKPPRLDHPAKNGKVSNLYKTLAALYGVSVMSDEQLQNAEEFVQNAVGREYQLTLETKPSGWVEIVHIAPVRKTRSRKKEEDEEVPF
Ga0308401_100011728F018115AGGAGMNDAEERFVRRYAHLPPDAPLDRHAARALLRRALADREALAEYLLNNECAPSLLGEFINRHWNDALSNTARGASLRLASRTLRALDCLEERDRWAVLEWMQRGVVPSTRILCRLCEEIDD
Ga0308401_100011729F005028AGGAGMRDNDLRNDDLRAAMSFFAERLRGVDGDETRLLRRTRHKLRNETRLLRWTRHKLRNDAQAVAELMLTVGYRPTYIRYFLRYHIPALNESAAVGETYTDPDATAEAHLGLCWRLDEDVLTVYTDLHAAAKRLRQPHRDLAAVCLKWGYVHETVVQMLAKALERKPRNVVED
Ga0308401_100011730F032180AGGAMWWKIEEIPEQELENWANAVGRFERAAKRDVAVRVAGAFVIYDLNGVLGYVAGREAPDGAYLVERWVRGKKGWTLYE
Ga0308401_10001176F105262AGGAGGMLVQETIQPLLRYFNAAASGTDTSVISIANAQAVRIVAHTGTVTGSASLQVHVNDTNNTNNSAQLTDKTIASLASNRTYEIFVTGAEAYAAKTHASHMFVRIAGTGTAPIAIEISAFPARDVPATLPTDWTRVL
Ga0308401_10001178F002970GGAGMSSSAVTDIIELLAGLAVQYNSAVVPVQRLASQPNWSDAAQLPVRIIPALGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALVDYIEDYVAHLRFAWLTRGDVQLLNVSGIIDVIRYGERAYEGVAMTTRFAHLVRAPSS
Ga0308401_10001179F005302AGGAGGMSHSGVIAGLYAGNYAVEISTDATTWTAVSNATVKIDDVELSRPSGEAYVGGSSDYATVTIGKQEPVELTLTFLYSEASGSAANTIVDRFRSATPTLGVRWSPRGLVDSARAYATSNDGGTSFGLGVITGVTLSALDPSDAEPYVAMVTVRTPSLRQYTLGSNPTNLNPAS
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