NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308401_1000230

Scaffold Ga0308401_1000230


Overview

Basic Information
Taxon OID3300031767 Open in IMG/M
Scaffold IDGa0308401_1000230 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16788
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (30.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023603Metagenome / Metatranscriptome209N
F054062Metagenome / Metatranscriptome140N
F054644Metagenome / Metatranscriptome139Y
F060935Metagenome / Metatranscriptome132N
F061874Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0308401_100023018F061874AGGAGVRMRLSISTCGDVWRIGAGQKCARPDINSLGMTVSKNMGQSPKRSETPLWRRKANYVLRELVRAWHGLPYDTAVMWGFRYALDDILHTFAKEHDLPIPKLFFWFERFWEKYSGYLGERVFTALDRSKLMEIMLRGFPSSRTELCKSFFYDQSVYGIMHLYSVLFLWEVGRGNRVLCYKREKWPLGYYESLEVAPLDSFVIWQVKRMLNERTET
Ga0308401_100023019F054644N/AMYYTIESEGLRERWLFRLYQNACMAALELAQRTPHEVRVVRLATASGLGRQIMCVYNCKYEVSASPPPIQVEEGEEEGKRRYRRKRKK
Ga0308401_10002303F023603N/AMLYTTEDFTGQYRLDSNAITQADYQRAIDEHERALLEYFFEPDSVEKIYAALPSSAPAVGVRNVLRDLALPFIFGRIKMGVGSSVAGEPNTQGYTRIGYTPYLAYRGSETLRRLMRFAPFVVQAELTAPAATIPYQSPIPQAPDFVAIGDPVRAYTATGEVHTQVVSVTATDITLALSLPAGPVRLIVENLRIRISRAYLTF
Ga0308401_10002304F054062N/AMGKLRELLAKLLAKLLGWLRKKTWRKKLRELSWKDFCDGLDKDPPDDVQKEAEHVFFDHVFPEALLTFFQNASELLLLYEAALSAPAMKPIADAKFNELFKQNPIPFYESLVPVLKNMGAEPEKATFLEICAFLTTYKS
Ga0308401_10002309F060935N/AMTNSHPKKTPDFAHPQGNGVAGEVAKENRRTKEYKARVAAERHVLRSGDTKTIWGKYLRYLYAELLKTYFGHKYDPDVRERFGDLFLSTMEAYFAKEKRPLRRYLPALTYLLWQSHGLPSEAARLEWAFERIDWGIDAVFGESELVRRILRLAAVVDTNGPPPTWVSDWDFHAYALKGGLPKAKPPVTLPLNHLLTANYPPMDWLRFFAVEAGRPDLLFGLDGLTPVLKKPNPPIL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.