NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308401_1000431

Scaffold Ga0308401_1000431


Overview

Basic Information
Taxon OID3300031767 Open in IMG/M
Scaffold IDGa0308401_1000431 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11968
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (86.36%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002795Metagenome / Metatranscriptome529Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N
F008135Metagenome / Metatranscriptome338Y

Sequences

Protein IDFamilyRBSSequence
Ga0308401_100043111F002795AGGAGGMATNDGLVLRGMIAAYREFVSRKDGRTYRVATVYGDLVAGETILCAVDGYDVFVDSPYARGEIVELPARMQFLRDNSGRPTIRLYVDEGVR
Ga0308401_100043112F008135AGGAGGMSIVDDPRTKRVLTEAGAGIARVLDARQRHAIVLAVDVVWYIVAALPPDEHMTCRDVVRLLRWFRQGFQEREEDDGDE
Ga0308401_100043115F004024AGGAMRSERDYVRQPLNDDDMMFLDARATLAAALARAVVGYSDSRVRALAWLAVATPRLYDRVAPIVESAAIRQSPGASRTFRDALRALSLEEYVRRRDERRSDR
Ga0308401_100043116F002978AGGVSSVRDWRVTIVPWADRRLWFIQARRGRRVIWGIVYDADDPDSVSLARRAIATLRSAGADCSALPAVLPGVGQEP
Ga0308401_100043117F000642AGGAGMQEMSVALALCAVGAAIWYMRRREAGAGRVTGWLLLYDDLGGWRVLPASYGDAGIVADGVTYPASLPALRAGRELIWIARCESAALIEHQALERAREAAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVSALQALVTQILALVGDK
Ga0308401_100043118F001381GAGMQYVIATLYVLCWLALAAAAALVLPRWALPAAIVQLAVAYVMLRAWLTAAAGGDD
Ga0308401_10004312F002978GAGMSVRDWRVTLKPWADRRLWFLQARRGRRVVWGVVYDSADPDSVALARRAIATLRAAGADCSALPSPLPGVGQEP
Ga0308401_10004313F000642AGGVQEISIALAICAVGAAVWYMRRREASGRVRGWLLLYDDVGGWRVLPAAYGDAGVVADGVTYPASLPVVRVDRTLVWIARCDAAALIEHQALERAREAAALASLWRGGGQWLDLMRVLGVVLPAVFAYFTWAQVAGLQALVAQILALVGER
Ga0308401_10004315F000855GAGGMDWLEDFFSKVVSWFDERAANIYNAVVAFINVLVDVWNGWMDALLHPARAMPSIPALRWIVDWLGGIVDYTRLMYMLVDYVAYASVVQQALAAQLTIVFVGLGFRAWLVLRRIVLVS
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