NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308401_1000529

Scaffold Ga0308401_1000529


Overview

Basic Information
Taxon OID3300031767 Open in IMG/M
Scaffold IDGa0308401_1000529 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10970
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Associated Families12

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F007976Metagenome / Metatranscriptome341Y
F008499Metagenome / Metatranscriptome332Y
F018115Metagenome / Metatranscriptome236Y
F025895Metagenome / Metatranscriptome199Y
F031016Metagenome / Metatranscriptome183Y
F032180Metagenome / Metatranscriptome180Y
F043176Metagenome / Metatranscriptome156Y
F044842Metagenome / Metatranscriptome153Y
F075805Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0308401_100052910F044842AGGAGGVEEIELWCGVRGNTFRSTQCVRFVGEFLAVVDVARADEWVERCVLYRTEDGRVAVHQLRLSLLDDGVDVAEAYILPALDAGEGVREQW
Ga0308401_100052913F031016AGGAGGMTTITIWKGSRRVVLGDDIEFVEYETFIGEELGAVWEEENSRGTHTIFYRTEDGKIVVHQVLWSRWENEATYAYIHVFPALEGVNGAAAMFWRELRKAGLIPPRTTSLDE
Ga0308401_100052914F075805AGGAGGMRVRVWHGWRGVHGNRDVSQFVWIEFDGEPLGSLVVEIDEDRTDERAFYQTTDGRLVVAEHRYGDWGKGGVDYGVVSVYGSIEDAARRGWRDDLVRIGAYDAPTRELDEWLSQYEEEE
Ga0308401_100052915F002982GAGGMKIAFERTPTAICAVLTDAGECDRIISVARASDAFRAFGIFTRDVSPAAYKPLDALFALPRVVCVEIERREGGWRVEVVYWHKTHGTLAQYEEEAATLSEALARCVWALAR
Ga0308401_100052916F007976AGGAMFSTELSNFLRVAIDVQAEPYPGVHVDDGVILATDGVMLVAKKYNNPVYLRGRGSLSPKAAKVLAALAEASNIGSIEVNGNRVTATAQTTLYDEKTGGEVAGEYCEVKLPEFYCPRAPVARMLGVLTDESRGWETVAENPNVKVLKEMSARDYVALIDNPRNGGELFRPKEIDDPHWYSVGQLRRGLRLFGARARLSVRRNAKGWLAFEDGYGHTFAVTPFVKHN
Ga0308401_100052918F043176N/AMLQTYKIWEGERTFLPGDDTSKFTIIEITGEELGWFEDVVDGKTYYVYQTEGEVVINIVEQNYGIGEPSRGSIHRYSNLEEAAADGFEQALKDMRLI
Ga0308401_10005293F004307AGGAMFKELINHNGNGRERPELNGAYVGRFLGVKERQRPTFETRLSPEPTYEDVFVFEFEVVDPELEAPLRVSRWVRKPPRLDHPAKNGKVSNLYKTLAALYGVSVMSDEQLQNAEEFVQSAVGREYQLTIETKPSGWYEIVHIAPVRKARNRKKEEDEEVPF
Ga0308401_10005294F008499GGAMKKSRSEPRWKRKEREALKALQALFGRVSDPSLARLLTSTGRVGHLTRFGVDGFVGDNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERKDE
Ga0308401_10005295F018115AGGAGMNDAEERFVRWYAHLAEDAPLDRHAARALLRRALADREALAEYLLEHECAPSLLGEFINRHWNDALSDAARGASLRLASRTLRALDCLEERDRWAVLEWMQRGVVPSARILRRLCEEIND
Ga0308401_10005296F005028AGGAGMRDNDLRNDDLRAAMSFFAERLRGVDGDETRLLRWTRHKLRNDAQAVAELMLTVGYRPTFIRYFLRYHIPALNESAAVGETYTDPDAATEAHLGLCWRLDDVVLTVVSDLHAAAKRLRQPYRDLAAVCLKWGYVHETVVQMLAKALERNPRNVVED
Ga0308401_10005297F032180GGAGLEEWTHSVGRFERAAKRDLDVRAAGAFVIYELDGVLGYVAGREAPEGAYLVERWVRGKKGWTLYE
Ga0308401_10005298F025895AGGAMSDLIAWVIAGGVILALVNSNVADGLLSALDLSDNLRRAVDWARGVRGVPAGVASACFFILAYVFGALAYRYDLVPTWRFIQPIAADVLATGAEWLTLFALFLTLLPTLIELATVGLVQRDIKALQWMVYFFIFFDIVTDYREAVALVDVWQRGGLFAPLPDALEGAAAVLAKVGWTFAASFAFEFLTILCAVTALLLAANVRAASGGGGGGR
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