NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308401_1000622

Scaffold Ga0308401_1000622


Overview

Basic Information
Taxon OID3300031767 Open in IMG/M
Scaffold IDGa0308401_1000622 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10154
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F002978Metagenome / Metatranscriptome516Y

Sequences

Protein IDFamilyRBSSequence
Ga0308401_100062217F000642AGGAGVLALCAVAAAVWYMRRRDAGAGRVRGWLLLYDDLGGWRALPAVYADSGVVADGVTYPASLPALRAGRELVWIARCDSAALIEHQALERARESAALASLWRGGGQWLDLLRVLGVVLPAVFAYFTWAQVAALQTLVAQILALVGER
Ga0308401_100062218F002978N/AVTLKPWADRRLWFVQARCGGRVVWGVVYDADDPDSVSLARRAVATLRAAGADCSALPGALPGVGQKP
Ga0308401_10006225F002795GGAGGMATNSGLMLRGMVASYREFVSRTNGKLYRVITVYGDLVAGETVLCTVDGYDVFVDSPRYARGELVELPARMQFLRDNSGRPVIRLYVDEGVR
Ga0308401_10006226F002372AGGGGGMPTRREDALWSVVHRRASHLRALLDGLDDVDVSIAYELHYYPYAIVELLRVRDDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVFV
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