NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308401_1000880

Scaffold Ga0308401_1000880


Overview

Basic Information
Taxon OID3300031767 Open in IMG/M
Scaffold IDGa0308401_1000880 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8476
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F008135Metagenome / Metatranscriptome338Y

Sequences

Protein IDFamilyRBSSequence
Ga0308401_100088010F001381GAGMQYVIATLYVLLWLALAAAAALVLPIWALPAALVQLAVAYVMLRAFWLTVARDDDGA
Ga0308401_100088011F000855GAGGMGWLEDFFSKIVGWLDQISAGVHNAIIGWVNGLIDIWNGWMDSLLHPAQAMPSVPALRWVVDWLGGIVDYTRLMYMLVDYVAYAAIVQQALTAQIGIVIVGLGFRAWLVIRRVVLVS
Ga0308401_10008802F002372AGGGGGMPTRREDALWSVVHRRASHLRALLDGLDDVDMSIAYELHYYPYAIVELLRVREDAPPLVLRSLYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA
Ga0308401_10008803F002795AGGAGGMATNDGLVLRGMVAAYREFISRKDGRTYRVVTVYGDLVAGETVLCAVDGYDVFVDTPGYARGELVELPARLQFVRDASGRPAVRLYVDEGVR
Ga0308401_10008804F008135AGGAGGMRAVDDPRTERVLTEAGTSIARVLDARRRHAIVMAVDAVWYIVAALPPDEHMTCRDVVRLLRWFREGFQEREEDDGDE
Ga0308401_10008805F002229GGAGGMVTLLTLDGVEEIDYTPSDAEIRASLDDAGLYGMVLHGVTWMRLVSGVGWWTVIGGRRITATLAAIGWCWVMDGPGERGYWSATLSAVVADVCAMYGGCVED
Ga0308401_10008809F000642N/AMRHGAVREGAGPSGGAVDGAPDGASSGARGAQLVVLMQTISIALALCAVAAAVWYMRRRDVGAGRVRGWLLVYDDLGGWRVLPASYGDAGVVADGVTYPASLPVVRAGRELLWIARCESAALIDHQALERARESAALASLWRGGGQWIDLLRVLGVVLPAVFAYFTWAQVSALQSLVAQILALVGDK
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