NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308401_1001008

Scaffold Ga0308401_1001008


Overview

Basic Information
Taxon OID3300031767 Open in IMG/M
Scaffold IDGa0308401_1001008 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7864
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F006252Metagenome / Metatranscriptome377Y
F008499Metagenome / Metatranscriptome332Y
F019420Metagenome / Metatranscriptome229Y
F025895Metagenome / Metatranscriptome199Y
F032180Metagenome / Metatranscriptome180Y
F060673Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0308401_10010081F060673N/AKPMSFISALFQRIGVGIEGKQQRVEGGRRVRVYRLVNVERARLRTTGIRKRHADRAAPVYEFLGTPVTTPYRNKRKSGVVTVAAAVH
Ga0308401_100100810F025895AGGAMSDLIAWVIAGGVILALVNSNVADGLLSALDLSDNLRRAVDWARGVRGVPAGVASACFFILAYVFGALAYRYDLVPTWRFIQPIAADVLATGAEWLTLFALFLTLLPTLIELATVGLVQRDIKALQWMVYFFIFFDIVTDYREAVALVDVWQRGGLFAPLPDALEGAAAVLAKVGWTFAASFAFEFLTILCAVTALLLAANVRAPGGGGGGR
Ga0308401_10010082F019420AGGGGGMATYRDVTFWSGATDGDCEAAVIRARLLGMVIELGDDDERPDKMTAFYAADGGGIIVYEVECREADGRMTARWQRVASLEDVRRNRAYAACLERLGL
Ga0308401_10010083F006252N/AVKSFDEQAAFGLPYERVIAQTAALLLYPQRLDLTLVRLDAYAPLDYLLLDGEQPVAALEVKRRSVRSDTYPTTIIPQSVVDAARRLTIPVYAAILFTDGLAVFDVLRTPSTVRWLRTRRGALRKHREYDISERLVKVEEVHQRQRRSA
Ga0308401_10010086F004307AGGAMFKELIRNGEEARPELNGAYVGRFLGVKERQRPTFETRNAPEPVMEDVFVFEFEVEDDDGNPLRVSKWVRKPTRLTHPSKNGKVTNLYRVLAALYGVAQMTDAQLERAEEFVENEAIGREYQLTLETKPSGWVEIVHIAPVRARRKEKQIDDVPF
Ga0308401_10010087F008499AGGAMTYRSKSEPRWKRKEREALKALQATFGRVSDPSLARLLTPTGRVGHLTRFGVDGFVGDNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKNKGDGDA
Ga0308401_10010088F005028GGAMRDDDLHAAMRFFAERLRGVDGDETRLLRWTRHKLRNDARAVAALMLHVGYRPTFIRYFLRYHIPALNESAAVGETYTDPDATDAHLGLCWRLDEDVLTVYSDLHAAAKRLRQPYRDLAAVCLKWGYVHETVVQLLAKALERKAKDVVED
Ga0308401_10010089F032180AGGAMWWKIEEIPHQELEDWTKAVGRFERAAKRDVAVRAAGAFVIYSLDGALGYVAGREAPDGAYLVERWVRGKKGWTLYE
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