NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308401_1001270

Scaffold Ga0308401_1001270


Overview

Basic Information
Taxon OID3300031767 Open in IMG/M
Scaffold IDGa0308401_1001270 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7024
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F005302Metagenome / Metatranscriptome405Y
F005631Metagenome / Metatranscriptome394N
F067304Metagenome / Metatranscriptome125Y
F105262Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0308401_100127010F005631GGAGMRVSVAVDLDNALRKLLPRAARIEAALDAGATAAHGVMQIYPPPPAGSRYRRTGNLRQKLRIKKLSRTSRIVENTASYARYVYGMPQARVHRGRWASLRDAAEAAKKEAIAVLKGR
Ga0308401_10012702F067304N/AMRCDQRLVPPLRAQRRKMLRYAPERLTIKRVGRAVVDVSAQHQFGVRGGQRREVEQT
Ga0308401_10012704F005302AGGAGGMSHSGVIAGLYAGNFAVEISTNGTTWTAVSNATVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPVELTLTFLYNEDTNSAANTIFGQFQSASPRLGVRWSPRGLVSQARAYATSNDGGTTTGLGVITNVTLSALDPGDAEPYVAMVTVRTPSLRQYTLGNDPTNLS
Ga0308401_10012705F002970GGAGMSYSTVVDVIELLAGLAVQYNSAVVPVRRLSTQPNWSDAAQLPVRIIPTLGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALADYIEDYVARLRFAWLTRGDVQLLNVSGIVDVVRYGERAYEGVAMTTRFAHLIRAPSA
Ga0308401_10012707F105262AGGAGGMLVQETIQPLLRYFNANVTAPSETSVISIANAQAVRIVAHTGTVADTASLQVHVNDTNNTNNSTQLTDKAIASLASNRTYEIFVTGAEAYAAKTHASHMFVRIAGTGTAQIAIEISAFPARDVPASLPSGWTRVL
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