NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308401_1001787

Scaffold Ga0308401_1001787


Overview

Basic Information
Taxon OID3300031767 Open in IMG/M
Scaffold IDGa0308401_1001787 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5856
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N
F066811Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0308401_10017872F004024AGGAMRSERDYLRQSSLNDDDMMFLDARATLAAALARAVVGYSDSRVRALAWLSIATPRLYDRIAPLIESSAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER
Ga0308401_10017873F002978AGGVSDLRDWRVTIVPWADRRLWFLQARRGRRVVWGVVYDAGDPDSVALARRAIATLRAAGADCSALPSPLPGAPGA
Ga0308401_10017874F000642GAGGVQEISIALALCAVAAAVWYMRRRDVGAGRVRGWLLLHDDLGGWRVFPAAYGDAGVVADGVTYPASLPVVRVDRTLVWIARCESAALIEHQALERAREAAALASLWKGGGQWLDFLRVAGVVLPAAFAYFTWAQVAGLQALVAQILALVGER
Ga0308401_10017876F000855GAGGMDWIEDFWSKVISWLDQLSASIHNGIISWINSLVDVWNGWMDALLHPAQAMPSNPALRWIVDWLGGIADYTRLMYLLVDYVAYAWIVQQALLAQLAIVAVGLGFRAWLVIRRVVLVS
Ga0308401_10017878F066811AGGAGGMEFNNPPQFNAPNMTDILNAATSIFNPFVSVIALAIGVTLGARMLGRIVRLF
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Institute for Fundamental Biomedical Research
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