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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031767 Open in IMG/M |
| Scaffold ID | Ga0308401_1004192 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3775 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022604 | Metagenome / Metatranscriptome | 213 | N |
| F025421 | Metagenome / Metatranscriptome | 201 | Y |
| F038570 | Metagenome / Metatranscriptome | 165 | N |
| F042758 | Metagenome / Metatranscriptome | 157 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308401_10041922 | F042758 | AGGAGG | MKPTDFLNIAGRLPAQAITGATETTSVDMQLLRGVAAVCIVGTATTPPSFAIQSSADNATFTNLAGKSVTSIPANSEAVINIRDEDLPDGHRWIRAAVNGNATVAVVFIGTSARNNPPAKLASTTIVD |
| Ga0308401_10041924 | F022604 | GAGG | MLSAVNAVHAVVAAVPGIVAAYTTVPMSITTAALPMALVTPTGENRRQHAHAMVRIETLVRVRIVHSPIAQGVTEAQQSALYTLADDVMTKITDDITLGGQVDHVASVDADEPSIYTLAGTDYLSISVVARVVEKI |
| Ga0308401_10041926 | F038570 | AGGAG | MPATHLRRVQLGQQTAFAAPVAATSILRGVKDGSVTINHNDAVVEELGRSVSDLIVFSQRHAEGELELQTTYEDILYGLFGLFGPVAPSGGARTFNAPITNYAAPQIYTIEYGATGAEYRVVGGILREWTLRYEANAGVTENWAFIGRSVQANALTGSLPTRVVTPVVSTHASWFMDNIGTAHGTTPIPGTVIEAELSINTNRHLKMFEGAQPITWGEGRWEAQLTITAEFNTTAKAWVDALLTDRVARNIRANFVETANTRELRVDFVGLIGEPVELFGDRDGNMTAELTFKALVAGPLNNWLQIRTINGIATLP |
| Ga0308401_10041927 | F025421 | N/A | MIDLSKVRRIDRSAPGSFMEYAHLQATISEGDLTAIARLLESYGVDTSQLSFNELVDVVKHIAGEPTPLGDTSATA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |