NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308401_1005643

Scaffold Ga0308401_1005643


Overview

Basic Information
Taxon OID3300031767 Open in IMG/M
Scaffold IDGa0308401_1005643 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3207
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007033Metagenome / Metatranscriptome359Y
F024322Metagenome / Metatranscriptome206N
F038584Metagenome / Metatranscriptome165Y
F044249Metagenome / Metatranscriptome154N

Sequences

Protein IDFamilyRBSSequence
Ga0308401_10056431F007033GAGMQCRCSQPLWALGIPDCHPVLRPIRRVVFETVLNSSSAPADFDLPNSSLYPNARRLMTPVLYNVESERPEAVFEELSGTKFFVRHQPRAFKALVAKPPTEWGINIEQLRCVSRLGVFLIDDAGVVWGRRVSVNEAAPIPIEPGTVQARLLFPSDATITKYEFSFDFAQSLMDFELVPVFADAGLLNYVPRIAARIAVLNIPPLVVLVYALYARGARDFYTPITGLATYLEVRDNAN
Ga0308401_10056432F024322GAGVWANYLTPPSPVQVDTSVGTLTIQTGLARAFAREYDVSTYAFPFSTEERVAFHPPPIFVAHYNEFSQIAARQQDAFLAVIPDARMGKSEWGEVEHEAFFFAPALDTEEFEVQLDRIAGVRESLMELWPKMVSITEIVPKFSRRAEWGTGEKLVKGEWIAIRLTINLKDYELNAV
Ga0308401_10056433F044249GGCGGMTKRDALLALLGASLTIVAKKYAMVLAALIVLGSLANFLGWIHAIVSGEGCKAVKVLQGTARLVFYLIFYIALLVALEQVASYLIPPLLSVAIIYEASLALKKAVQLNIIPSGLVQQLTKVFRREPPEKAS
Ga0308401_10056435F038584N/AMTEEIKQIQKAAEELTATLHATAATEEEIKTLDAISKAAAHIRQQLRERVPSAGTRIKVSELRSARKLMQRYVQKTTVGANTPREYVGESFYVTRQPVIEFIQDYLRTETLDVLAEITQNRLNPFTGAPDTVGEGAAKPSMATTPQRLSTTHNKLAFTDLITDEAIFSYPNIVDFLIWHGAYRLEVLLHNNLIAAMAAVATAASLPTGIISPQVADLLIYMRAFHDLQAAIGPRGDWPAQAAILPFPYYWRLRFGALKDTIGQYLQLDRQLEGLALIPAGTAQTNPTIVFNENELEVFFFGDISVNFGRVFDGGSETNVRRLAMDLYYAPLPHAGRPVIVANTQNAINSMV
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