NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308401_1008616

Scaffold Ga0308401_1008616


Overview

Basic Information
Taxon OID3300031767 Open in IMG/M
Scaffold IDGa0308401_1008616 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2505
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F004024Metagenome / Metatranscriptome456N
F011940Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0308401_10086161F011940N/ARYTLMPITPPPGGDDMSWDGSLVGDLMDGLEALQRAVAPPTGRICDLPAPVLADAPEYHGMRDAFPDFILGLCNFFLVASPVLGFVRLPVTLMVIGFAFWTAWRVFRSLS
Ga0308401_10086162F000855GAGGMDWIEDFWSKVISWLDQLSASIHNNIISWINSLIDIWNGWMDSLLHPAQAMPSNSALRWVVDWLGGMADYTRMMYMLVDYVAYAAIVQQALTAQIGIVIVGLGFRAWLVIRRVVLVS
Ga0308401_10086163F001381GAGMQYVVATLYVLLWFSLAALVTLVLPLWALPAALVQLAVAYVMLRSWLTAAAGGDD
Ga0308401_10086164F000642GAGGVQEISIALAICAVGAAVWYMRRRDAGAGRVRGWLLLYDDLGGWRVLPASYGDSGIVADGVTYPASLPALRAGRELIWIARCESAALIEHQALERAREAAALAGLWRGGGQWLDLLRVLGVVLPAAFAYFTWAQVAGLQALVAQILALVGER
Ga0308401_10086166F004024AGGAMHSERDYLRQPSLTDDDMMFLDARATLAAALARAVVGYSDSRVRALAWLAVATPRLYDRIAPIVESSAIRQSPGASRTLRDALRALSLEEYVRRRDERRSDR
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