NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318509_10222048

Scaffold Ga0318509_10222048


Overview

Basic Information
Taxon OID3300031768 Open in IMG/M
Scaffold IDGa0318509_10222048 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1053
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F004042Metagenome / Metatranscriptome456Y
F007884Metagenome / Metatranscriptome343Y

Sequences

Protein IDFamilyRBSSequence
Ga0318509_102220482F000092N/AVEVSLIDGKVEITPKEDGQIDPLQLLKATYDSGVTAGEMDVTARGKIVKDSSGIPALQVQSNRSFSLVPNELSKGLDSLAGTQTMVTVRGQLFKKPPGKKQKVDTSVPLKLLILEVEKTQ
Ga0318509_102220483F004042GGAMRGGTMNPKRFLLVLLFGCTIAPVSQAQIKHIEMRVEGMT
Ga0318509_102220484F007884N/ASYRPYEAKDGKREWFIGPALTWLHSQDDRIEGNTENGNGGDVLLAGMTTYVGVRPGMHLWFGMDWDVAHSTGAAFMPIRRHISFGVTQQFRMHFFK
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