NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318526_10308708

Scaffold Ga0318526_10308708


Overview

Basic Information
Taxon OID3300031769 Open in IMG/M
Scaffold IDGa0318526_10308708 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)647
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008262Metagenome / Metatranscriptome336Y
F038033Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0318526_103087081F008262N/ADTEIETRDHGVMTVAELERLVCKQHPRDLRCSGTFHDPTRVRTDSHLINWGRHGLGIWDTMTETTWHRRERAPSATFAFLEQLRGRNPFK
Ga0318526_103087082F038033AGGAMSASDDFDGEAISRADREFLTKLGDHPLMRNPLYSAPPPPLPNYAALTSAIAIEAAQKASFAAALDWMLINYAFCMSAFMGKGGIISLVDGEMGSLTSLRGFMQPYALVSEGPRGGTKIASVVDD
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