NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315288_10000809

Scaffold Ga0315288_10000809


Overview

Basic Information
Taxon OID3300031772 Open in IMG/M
Scaffold IDGa0315288_10000809 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39852
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (67.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5072Long. (o)-110.3564Alt. (m)Depth (m)87
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036462Metagenome / Metatranscriptome170Y
F038776Metagenome / Metatranscriptome165Y
F042051Metagenome / Metatranscriptome159Y
F042607Metagenome158Y
F071164Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0315288_1000080912F038776N/AMKNSIDYSGLENKIYKRAYRLSDVKDRLETVAFDVVRFKDSDNSADLWQVQSADDGDYIVAMYQEEEVKVAALWGVVVSKTAGDLQVSYKGDPLVRVSSSKLGIPRSELSKIEEYLPSKLAANKKLVKALLNELTESAKKEVLNKYPELV
Ga0315288_1000080919F042051AGGAGMTTFGEVSYNDDLYGGDKKQVNNKDLFLRLGEGSNELRLVTAPFQYLVHKYKKEGDPGFGQKVSCSQIHGSCQLCDGGDKAKARWFYGVIDRKTGTYKVLDVSYQVFSAIRKLARNTQRWGDPTKYDIDIVVDKNGGAAGYYSVQPISKEPLSAGDQKLKDDADLDDLKRRCTPLTPENVQKRIDKINGVTSDAAAPAAGKTTKAAPKAAKAQTVSMTDDDEMGSDFPAYAGDTEAPTAS
Ga0315288_1000080923F036462AGGAMSQQVRLGDFLGTNLEEDFMNFDLTEVEAVLENLRDIDAIDLSHVEVLQQQALRGADIITGYLGKMVKTIGYLEAKVNSTKNKVSLEYKDPDGSRTTIDMKKWAGESSPEVEVVQIKLANAKGSKLVLDRKYEILVKSHHHFKDIAAGLRKTILGYSQGTTSEPIPNGYE
Ga0315288_1000080924F042607GAGMIKIIDNKKIEMTDDEWTMYEKIVKSYTTSTNKGEDLFIDLFETDANGIIVFLKPPSKRQTSFEVFLFLMAIMQHQHLRQLHQQVDDLCAQLKEKFKDK
Ga0315288_100008099F071164AGGAGMRIAEMLQAIATWLESPNNEALLLAESDENCSQVVAESCVLAAALLKKAAEEVDGMEAPEASNITPESLDEIAALAGAFDASGDPQLKKQASVLDELLMSIAAPPNAYAERKDLQDNRLLELKKKYESPSEELHKVNSIKKSEDAIDKSNMTKKYTILEAPLSTRYCPDHPGVQIARVGEHMWQCELDKKAYNFETGFELNNGSKVPGGDVAQQTQTSEIPFHAIFDTREGRLGYNK
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