NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315288_10187087

Scaffold Ga0315288_10187087


Overview

Basic Information
Taxon OID3300031772 Open in IMG/M
Scaffold IDGa0315288_10187087 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2264
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5072Long. (o)-110.3564Alt. (m)Depth (m)87
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019444Metagenome229Y
F042896Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0315288_101870877F042896N/AMTQIVYVRLSYEDRASEEVPIHVNYNADFSKNSNRKRLLNRLLKQTPNVTEVKLLF
Ga0315288_101870878F019444N/AMTNKVLCHLGDPRKSKPETLQEYGKLRERMIQRNWVSLSEVDFVRAVTEQGCPFYGALLNGRDLQELQFEKLCWRTQQLVGLDFDVCHISADDMRKHFQYLGLQPFLGYYTFSNDSANGGESYRLLWRVDTDLNVNYDECARALKKMRALTNNLADKHAANPTRMWQGTNSGFFH
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Institute for Fundamental Biomedical Research
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