Basic Information | |
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Taxon OID | 3300031772 Open in IMG/M |
Scaffold ID | Ga0315288_10284505 Open in IMG/M |
Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1737 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 44.5072 | Long. (o) | -110.3564 | Alt. (m) | Depth (m) | 87 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000403 | Metagenome / Metatranscriptome | 1177 | Y |
F005697 | Metagenome / Metatranscriptome | 392 | Y |
F009503 | Metagenome / Metatranscriptome | 317 | Y |
F024931 | Metagenome | 204 | N |
F025683 | Metagenome / Metatranscriptome | 200 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0315288_102845051 | F025683 | GGAG | MVLDLLDPETLGRLVLAIILMVISAAAGYAKGFKEGKREGMARRKAMIRHAANKAVN |
Ga0315288_102845052 | F005697 | AGGCGG | MGFLDNYEASRERLERWLATYPNGRIETRIVEFSAEKGYVLVEAKAYKGQPHGTECTVNADVVELPAGIDFAHGYVGAYQPNMKRWFVEDTVTSAIMRVQQLVMGGAERTVREVMEQIDQTPAKIANAEKDYDYWTTKFGDVPSYKTAAEAEQSGIPSLGSSMDEIANQLGGQLVEEKPRCEHGTRVWKTGESAKTGKAWGGYFCTEKAKANQCEPVWYQLGSTGQWVVRLP |
Ga0315288_102845053 | F000403 | AGG | MGGSSAMSDFVEIIYPQSMTAKLLENGAVIAEYKVEQCDKCSMLTKFDAFGYQKGYDRGEKIIWFCPGCR |
Ga0315288_102845054 | F024931 | N/A | MKMTLTHQEQMVCMLSAIKWETDTGKTMGNPQRYQKELSTYEYLTETAEAIGSEWVVAKYFNLPFDPYQQKFKGKADVGNAIEVRWTKYVAGQLIVHEYDRPSDIAVLVTGQAPHYFIAGWIPIAMAQRPKYRHSKQPNWWVTQINLQPIENLRKSTYGNVAI |
Ga0315288_102845055 | F009503 | AGGA | METLQFECRKCKKITKQLIHKITDNLPEGVEVIQCTKCEVMGVAQIGTSNANL |
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