NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315288_10640196

Scaffold Ga0315288_10640196


Overview

Basic Information
Taxon OID3300031772 Open in IMG/M
Scaffold IDGa0315288_10640196 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1016
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5072Long. (o)-110.3564Alt. (m)Depth (m)87
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001190Metagenome / Metatranscriptome753Y
F018836Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0315288_106401962F018836AGGAMTSSVPAGQIDADDWFDLDKYRQAAGVAYDFSKQKMETAGAQERETIGKGAAESRASAEQQDIFRRKDEERDSGQAQRAYRYXVIXWVGRQSXCVYPRIILRILRR
Ga0315288_106401963F001190GAGMTSTPTGQSATDDYFDINKFEQLLARLESSKGRQQRQKSLEGRRDVFAGGLASMMSNFXFFLVGLIRHDQ
Ga0315288_106401964F001190N/ADYFDITKFEELLNRLESSKGRQQRQKSLEGRRDIFAGGLASMMSNF
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