NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315332_10013975

Scaffold Ga0315332_10013975


Overview

Basic Information
Taxon OID3300031773 Open in IMG/M
Scaffold IDGa0315332_10013975 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4822
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007770Metagenome345Y
F016956Metagenome / Metatranscriptome243Y

Sequences

Protein IDFamilyRBSSequence
Ga0315332_100139753F007770N/AMSGEGHTTSFKRTTQATKSNKQLLEEFQGLAYSSKKIMSHMKWYGKEHSVELVEHGDEEQPKWRQESVAIKDTFEFYISTYESWYNDANNYECHETEGSYVSLAREFAHNNNLMYFPDGFPAEWIEQEIIDGKKNWNHYNVKSDDKNIDRICEVWYDYGIQKLKDGETTELWHQVKDKIKQLMGNRYECEYAK
Ga0315332_100139757F016956AGGAGMINTIETWKAPKKVASAIIDLALAHIKKVEINPEVKTEGDNFDYWYSYDLGDGNYVDYNIHCGDEWCILKQDGSGEYEYTDPSTWSWDVACYAVDPPTKDNPCHSIDTSREHYLFSYNKSYGDREVNLENE
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