NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315331_10124179

Scaffold Ga0315331_10124179


Overview

Basic Information
Taxon OID3300031774 Open in IMG/M
Scaffold IDGa0315331_10124179 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1922
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002399Metagenome / Metatranscriptome563Y
F004603Metagenome431Y
F037256Metagenome168Y
F038854Metagenome / Metatranscriptome165Y
F098031Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0315331_101241794F002399GGAGGMSKENRSKYKSIIGQLRKKYGLKDNTPIHKVEQIMTPKDWKAFSTALTFPNGKPTQRGK
Ga0315331_101241795F098031AGGGGGMKYNVELHVIQMHDVEVNATSYEDARNKAIQEWKDGYIYNDVGSPTFCKEEAKVVSFVSMPTIEEVLN
Ga0315331_101241796F038854AGGAGGMNNPRRIVSATILVEWSDNPKPVVLNNDMPNGLANDFDDWLTEIEEEEQD
Ga0315331_101241797F037256AGGAGMNNKKEYIFSNTFTVTEETEVLANSYEEAVDIFLSGGGTTDEVDSCGGDWECIQEPTDDEKQNQ
Ga0315331_101241798F004603AGAAGMIFSININGSIIDWCYTINNQEKQYHQTWIPKLSDIQIVTKELNGLTVSEVKKLILEDIQPDIQMVRDNTNKKARARREKNV
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