NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315331_10190704

Scaffold Ga0315331_10190704


Overview

Basic Information
Taxon OID3300031774 Open in IMG/M
Scaffold IDGa0315331_10190704 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1525
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019561Metagenome229Y
F024420Metagenome206N
F031295Metagenome183N

Sequences

Protein IDFamilyRBSSequence
Ga0315331_101907042F019561GGAGGMTDKFSKPILRNLRISLQDILKAESKSDKIPFELTLGNCSFDEDQAKFQLIVTFKGNSVQDIAKKKQKEDLEHYAKYFDIDLERKHPRYTLVGYKIKSRKLPWIITDNQKSGEYIISDDQAQKLFGKQDVDTFLKGQREAQANG
Ga0315331_101907044F031295GAGGMVRAEEKLHGVISRLTDEYNNYPHKRLKKSEVQNLVHDLEVVDAEFDDLKLPPITDDIKLDNKVCLFYIINELKDIITEPNVEDVEKRLTDFHNTLIFNLGINALHNHKNDWEDR
Ga0315331_101907046F024420N/AELRKIIDRNSCWQQEGRKFELLWNLLLSSDKRSFSEYFEEEHNIKLYDAMTFKEILTLCRDYNVGGRFKXVD
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