NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315326_10076595

Scaffold Ga0315326_10076595


Overview

Basic Information
Taxon OID3300031775 Open in IMG/M
Scaffold IDGa0315326_10076595 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 32315
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2149
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011337Metagenome292Y
F012921Metagenome / Metatranscriptome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0315326_100765951F011337N/AIGVNPFKIAGKPAWTESLSTMLFDLPRAGIKDIKIPLSPAIMRRIWPKPVRTTVFHLTDYNGLGKLKKMQGGKRSVSAFFNIEPIVIETGIKSEGGYVVEMDADILVASQDDISSQPDKTGRRWVTLSSLMNTPTDPDPGLGGGAKLKGMEKDISGMLVDIVTKHSDITPLPNINKAWNYLGKSIGGKEKSLIIKDYIDGMEKIMKKHSKVLGSLLTDYTKKRIQEPDPDSGDRPMWDELVVNNFKIKKVHIGPEFGPDWEDDDDIDGFPFELYQDTGDMADYITRTVQRIKL
Ga0315326_100765955F012921AGGMADDFDFGFSAVSTDEFKKTQTDTESTPSTGVSSDEFDELKKKMDSISSLIQSLGDKEDTSLFDETGETVKATGEKIARVEDKIDKILAMESSQVASALEEQGSSIRAVIDEVEERKG
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