NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308415_1000497

Scaffold Ga0308415_1000497


Overview

Basic Information
Taxon OID3300031776 Open in IMG/M
Scaffold IDGa0308415_1000497 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17197
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (82.76%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F002978Metagenome / Metatranscriptome516Y

Sequences

Protein IDFamilyRBSSequence
Ga0308415_10004972F002372AGGAGMPTRKEDALWSVVHRRSAHLRALLDGLDSIDVGVTYELDYYPYAIVELLRIREDAPPLVLRSVHVQANRQWEYHSEFVLRVVEAALQLVHEYRADPSLGGAEAVWA
Ga0308415_100049724F000855AGGAGGVDWLEDFFSKIVGWFDQISASIHNAIIGWINGLIDIWNGWMDSLLHPAQAMPSNPALRWIVDWLGGIADYTRLMYMLVDYVAYAWIVQQALTAQIGIVVVGLGFRAWLVIRRVVLVS
Ga0308415_10004973F002795AGGAGGMATNDGLVLRGMVAAYREFISRKDGRLFRVITVYGDLVAGETVLCSVDGYDVFVDAPGYARGELVELPARLQFVRDASGRPAVRLYVDEGVR
Ga0308415_10004977F002978GAGGVRSVRDWRVMLVPWADRRLWFIQARRGRRVVWGVVYDASDPDSVQLARRAIATLRAAGADCSALPSPLPGVGQEP
Ga0308415_10004978F000642GGTGGMQEISIALAICAVGAAVWYMRRRDAGAGRVRGWLLVYDDLGGWRVLPAAYGDSGVVADGVTYPASLPVVRVDRTLVWIARCDAAALIEHQALERARESAALASLWRGGGQWLDLLRVVGVVLPAVFAYFTWAQVSALQSLVAQILALVGER
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.