Scaffold Ga0308415

Basic Information
Taxon OID	3300031776 Open in IMG/M
Scaffold ID	Ga0308415_1000525 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16837
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (87.50%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

16837

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (87.50%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F022604	Metagenome / Metatranscriptome	213	N
F026171	Metagenome / Metatranscriptome	199	Y
F026459	Metagenome / Metatranscriptome	197	Y
F028964	Metagenome / Metatranscriptome	190	N
F038570	Metagenome / Metatranscriptome	165	N
F042758	Metagenome / Metatranscriptome	157	N
F059420	Metagenome	134	Y
F061873	Metagenome / Metatranscriptome	131	Y
F093039	Metagenome / Metatranscriptome	106	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0308415_100052512	F028964	AGG	MIGAEAILALTSLRQPGMRTGALALSGSFERRAMEVAECELEISVRAPSYELSAYGDVMMAMLPDRREYYFVTAIERRNTYYVVRGETFLRYLRDYYPDRYAGTSDAQWSGDAAAGVLRSLRPIEYVPVHSFASSFRDYWIITPDNVPPSVNVNTSFAWASRLEAAQEITRLAHAQGFPLVWWFECNRWCAVKDAAGNYGVEPSIALVFAHGLPRHGLFRPRWSGTVKYEAWVYDRSQPTAGVALGYGHGQDRDVTRARAARGLFNGWTYWEGRLDGRATGTSAAAQAALMRWRPIEAGTGQAYSQEMPRLGDQVFLVAGDHQRCAGIAHVVSERYMVTGGQVSSAEVGVVQI
Ga0308415_100052513	F059420	AGGAG	MEIDLFRGGASLTTLHYRNVPGQYSWVLRDFQGDLMDEVEALTRDALGGRTLLIGQQGRARRIVIVLDVQGTSMSNLHAAIQELESHVRWRRNEPPVLALRVRAQATSPWSVQGVILEQMNAQFEDDQYRATVTMRFACLSVYWREFIGTVSASNNTLTGNAFVVDLSTMTFTPITGISEAITNIDYRPASNEWIIFTFSRVWRAPATGGAAALIGSVSGATALRGCVAHDGSIIAIAQGINQLVRFTYPSSSPTVLGTFNSTPARVRRFDDSYVSVGEFSQYQTTTGLAGIVSTDITGAINSTFSPFSTSTIFPGGGRVRDVLIKDGIGIAIAHRVPSPSQSWVAVWSAQVAPYYVAEGASTWGPFEIDQASPIDDVTICAESWIHSGRTFNTLCRLRNLSSVVPYAYPTVSVGGVQDGCAVERFFFATSEPRKVFRLGNDGTAMPLFTSSANSIAIRRVGNLMCIGYLDTAIVWTPLTVDVSAVANTGTTAEIVPRLGSLSVPVFSCYSKVDTEILGEVLDPQTQAANYEPKYHGGGVVTPLPGTRYERMFRGSMNEAINRYWFAVGGSVTSNNVTLNRYKHDWR
Ga0308415_100052515	F093039	GAG	VTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREQVRRMKREIRRYGGR
Ga0308415_100052517	F038570	AGGAG	MPATHLRRVQLGQQTAFATPVAATSILRGVRDGSVTINHNDAVVEELGRTVSDLVIVSQRHAEGELELQCTYEDILYGLFGLFGPVAPSGGARTFNAPVVNYAAPQIYTIEYGAPGAEYRVVGGIIREWTLRYEANAGVTENWTFIGRAVQANTLTGSLPTRIVTPVVSTQASWFMDPIGTAHGTTPIPGTVIEAELSINTNRHLKMFEGSQPITWGEGRWEAQLNITAEFNATAKAWVDALLTDRVARNIRVNFVETAGSRELRIDFVGLIAESPELFGDRDGNMTVEVTFKALVAAPLNNWLQIRTINGVGTLP
Ga0308415_100052519	F022604	GAGG	MLSAVNAVSGVVASVPGIVSTYTTVPMSTSTATLPMALVTPVGENRRQHAHELVRIETLVRVRIVHSPIAQGVTEAQQSALYALADAVMTALTDDITLGGQVDHVASVDADEPAIYTLAGTDYLSISVVARVVEKI
Ga0308415_100052521	F042758	AGGAGG	MKPTDFLTIAGRLPAQAITGATNTTSIDMQLLRGVAAVCVVGAATTPPSFTIQSSADNNAFANLTGKAIASIPANSEGVINIRDEELPDGHRWIRAVVNGNATVAVVFIGTLARDNPPAKLASTTIVD
Ga0308415_10005253	F061873	AGGAGG	MNELKTQALQDLIDRGVAIREKRIAEEKARIAAFYEQLARESAEREREIRALLPPPLNELSKVDVGVRHAHIYITEPFPGKGKVRIYASKEDEQWQFLEYEAYNPDGYYLKFSSLEEAVAFAAGALEV
Ga0308415_10005255	F026459	AGGAGG	MNSQKVEMLRTINAIEATICPSANSIAMLVAALEAMGSGETIRRALERLSERASKREISSVTDLIRALYDIGEGVSALKISRLIAELKEGKTVDATYGLYTLVDLLPHDAYMSFGFAVESAQIRCGEHPDPQELLRDLDFDREGFRFGPAWEFWGEHAPEAIKTARESFVAHLLHAAGLADEPDYPEPLAD
Ga0308415_10005258	F026171	GGA	MSRSSLRKLRDAVKDARLADLPVAKALKALADMPEARAFKLAPDVLRRMLLESLPERYAVFLLDRAGYRVEMSLADLAYFARYDEILAELAVSVILYLDKE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308415_1000525

Overview

Ecosystem & Geography

Associated Families

Sequences