Scaffold Ga0308415

Basic Information
Taxon OID	3300031776 Open in IMG/M
Scaffold ID	Ga0308415_1000683 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14962
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (82.61%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

14962

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (82.61%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F022604	Metagenome / Metatranscriptome	213	N
F025421	Metagenome / Metatranscriptome	201	Y
F026171	Metagenome / Metatranscriptome	199	Y
F028964	Metagenome / Metatranscriptome	190	N
F029920	Metagenome	187	Y
F031690	Metagenome / Metatranscriptome	182	Y
F038570	Metagenome / Metatranscriptome	165	N
F042758	Metagenome / Metatranscriptome	157	N
F059420	Metagenome	134	Y
F093039	Metagenome / Metatranscriptome	106	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0308415_100068313	F028964	AGG	MIGAEVTLALTSLRSPGTRTSALALSGSFERRAMDVAECELEISVRAPSYELSAYGDVLMAMLPDRREYYFVTAIERRNTYYVLRGETFLRYLRDYYPERYAGTSDAQWNGDAAAGVLRALRPTESVPVHSGGVNFRDYWIVTPNNVPPSVAVNTSFAWASRLEAAQEITRLAHAKGFPLVWWFECGRWCAAKDATGNYGVEPSIALVFAHGLPCNGLFRPRWASSVKCEAWVYDRSQPTAGVALGYGHGQDRDVTRARAARGLFNGWTYWEGRLDGRATGTSTAAQAALMRWRPVEAGSGQAYSQAMPRLGDQVFLVAGDHQRCAGIAHVVSERYVVTGGQVSSAEVGVMQI
Ga0308415_100068314	F059420	AGGAG	MEIALFRGTSILTTLHYRNVPGQYSWVLRDLQGDLMDEVEVLTREALGGRTLVAGLQGRARRIVIVLDVQGTSMMNLHAAIRELESHVRWRKEPPLALLVRTQATDLWSSLGVILEQMSAQFEDDQYRATVTLRFVCRRVYWREEISTVAVSNNTLTGNAFVVDLSTMTFTPITGITGGIINIDYRQASNEWIIFTNDQVWRAPAAGGAAALVGSVTDSTTLRGCVAHDGSILAVAQGVNQLVRFTYPSSSPTVLGSFNGVPFRVRRTGASYISVGEFSQYQTTAGLAGMVSTDVTGAIISAFSPFPTSVIFPGGGRIRDVLFRDGIGIAIAYRAPSPSQSWVAVWSGQVSPYYVAEGASSWGPFEIDQSSEIDDVTICAESSIHSGRTFGTLCRLRNLSGIVPYAYPTVNVGGVQDGCAVERFTFATSEPRKVFRLGDDGTAMPLFAASVNSIAIRRVNNLMCVGYTSPANVWTPLTVDVSAIANTGTTAEIVPRLGGLAVPVFSCYSKVDTEILGEVIDPQTQAANYEPKYHSGGTVTPLPGTNYERMFRGTANEQAFAYWFAVGGNVPSNNVTLNRYKHDWR
Ga0308415_100068316	F093039	GAG	VTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKARQVKRTMRKHGGR
Ga0308415_100068317	F025421	GGA	MIDLTKVRRIDRSAPGSFMEYARLQNVIAEGNLMAIARALESYGVDTSQLSFNELVDVVKHIAGEPAPLSATSATE
Ga0308415_100068318	F038570	AGGAG	MPATHLRRVQLGQQSTFGTPVAATSILRGVKDGSVTINHNDAVVEELGRSVSDLIVFSQRHAEGELELQTTYEDILYGLFGLFGPVAPSGGARTFNAPVVNYAAPQIYTIEYGAPGAEYRVVGGIIREWTLRYEANAGVTENWAFIGRSVQANALTGSLPTRIVTPVLSRHASWFVDNIGTAHGTTPIPGTVIEAELTIDTNRHLKMFEGSQPLDWGEGRWEAQLSITAEFNATAKAWVDALLTDRVARNIRVNFVETASTRELRIDFVGLIAESPELFNDRDGNMTVEMTFRALVAAPLNNWLQIRTINGVGTLP
Ga0308415_10006832	F031690	AGGAG	MNHNHYPKNLLYCASFEVVVGTEHCRLYLFASNAEQAAKYTWPTKTRKRTRYVVSCERLAGLKYSDEIEAVAHRYGFADNRPHICDVMENHKSLASVIIETNALRWALSFLPDDAVKTVAISDKGLSIQGVPLGGIALYSAEMLVRSRPLRLLVKQMPRDETAQVDILGHRHVRALKISLGMETHYVFDYRNGFTAFIPRGD
Ga0308415_100068320	F022604	N/A	MLSAVNAVSALVASVPGIVSAYTTVPMSITTAALPMAIVTPAGENRRQHAHELVRIETLVRVRIVHSPIAQGVTEAQQSALYALADAVMAALMSDVTLGGQVDHIAGLDSEEPSIYTLAGTDYLSVSILTRVVEKI
Ga0308415_100068322	F042758	AGGAGG	MKPTDFLTIAGRLPAQAITGATETTSVDMQLLRGVAAVCIVGAATAPPSFAIQSSADNTTFTNLAGKSVSSIPANSEAVINIRDEDLPAGHRWIRAAVNGTATVAVVFIGTLARNNPPARLASTTVVD
Ga0308415_10006833	F029920	N/A	MSDLERAFREERPLKGFIAPGLALSYQPREHLVIGRADRRLDAEDVALAVALAREAFIFLVREPQCKVVELNGITWYLARWPLQRELVADHMPQGWKGETDEPQPLSQKPSVLRLI
Ga0308415_10006839	F026171	GGAGG	MMKRSLRKLREAVKVARLADMPVAVALKALADMPEARAFKLSPDVLRRMLLESLPERYAVFLLDRAGYRVEMSLADLAYFARYDEILAELAVSVILYLDKE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308415_1000683

Overview

Ecosystem & Geography

Associated Families

Sequences