NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308415_1000909

Scaffold Ga0308415_1000909


Overview

Basic Information
Taxon OID3300031776 Open in IMG/M
Scaffold IDGa0308415_1000909 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13126
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (90.48%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005631Metagenome / Metatranscriptome394N
F006418Metagenome / Metatranscriptome373Y
F010840Metagenome / Metatranscriptome298Y
F016404Metagenome / Metatranscriptome247N
F031016Metagenome / Metatranscriptome183Y
F043176Metagenome / Metatranscriptome156Y
F051735Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0308415_100090911F006418AGGAGMRKRRSSPSRGPQTAREIVIASGDDYRILFDCVARDYAVEYRGQPVGWRATESEARRLIDQLRREEASRGE
Ga0308415_100090914F051735AGGAGGMFQDVTILNGPVQKNGVSDYERVRIKARPLGRPHAWDNGSPWNEYTTNGGFILVFEAEDGSVYIQEIEWEVDPYPAADPSPRTYYYYERYDSIDEARAGWRGWLIEQALRD
Ga0308415_100090915F010840AGGAGGVNLPFSQPLDKVTFGALAAATVIILTWALREFAGIDLPAEVQAALAVIIGCVVSYHVPLSKFEAEAIARKYYKYK
Ga0308415_100090916F016404N/AMTVDELLTDESRAAVLRALLMIVLDEDVPASARVAAARLFLSQFDEQPNAERDVLVIFDEAAFVKTV
Ga0308415_100090919F005631GGAGMQVSVSVDLDNALRKMLPRAPQIEAALDAGAAAAHGVMQIYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARYVYGMPQARVHSGRWASLRDAAEAAKKEAIAVLKGR
Ga0308415_10009096F031016AGGAGGMTTITIWKGSRRVVLGNDIEFVEYETFIGEELGAVWEEENSRGTHTTFYRTHDGRIVVHVVRWSRWEGEATHAYIHVFPSLDGVNGAAAMFRWELENAGIIPPRTTSLDE
Ga0308415_10009099F043176AGGAGMQTYRVWEGERTFLPGDDTSKYTVIEIVAEELGWFEDVNPDGFSGTAYYVYRTESGEIIINVVNKNYGIGEPSRALIYRFISLEEAAQSEQRYALEELRLI
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