NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308415_1000912

Scaffold Ga0308415_1000912


Overview

Basic Information
Taxon OID3300031776 Open in IMG/M
Scaffold IDGa0308415_1000912 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13113
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F006252Metagenome / Metatranscriptome377Y
F007404Metagenome / Metatranscriptome351Y
F014738Metagenome / Metatranscriptome260Y
F016100Metagenome / Metatranscriptome249Y
F025895Metagenome / Metatranscriptome199Y
F032180Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0308415_100091211F006252GGAGGMLRSFEEQAAFGLPYERVIAQTAATLLYPHRLGLELVRLNEYASLDFLLLDNGQPIAALEVKRRSVRSDTYRTTILPQSVVDAARRLTIPVYAAILFSDGLAVFNVLSTPSRVRWLRTRRGTLRKHREYDIRERVVRVEAVHQRPRGCDTRSRYAA
Ga0308415_100091213F016100AGGAGGMVISVKVERFKEYSELMRVVSRSEKTPATNKDIIRPLNYELLIGSHLPEPDWHRLGALVVALFRGFTVVDVEIWKNDFGVWFADSFIEIGRRHRLRRGQGDTPIQAMIELITNIQRY
Ga0308415_100091214F014738GGAGGMKLEVLLMISAFAFAFVHPDAAQVAATAVVLLLVTRIERGRRARKKKSAPVVR
Ga0308415_100091215F007404GGAGGMDIVEMLQLLAAGHNGLTAIDYVWNAVFGAIGAATAYLADTNGEVFLPRYDREQHSVELGALGRVLVGAGAGVLVGYSGYVPFIAGVVAPTLLPLLIDKIAGFAGRERK
Ga0308415_10009123F025895AGGGGGMSEIISWVVAAGVIFALVNSNAADGILSALDLSDNLRRAVDWARGVRGVPALVAAICFFIMAYVFGALAYRYDLVPTWRFIQPIAADVLSTGAEWLTLFALFLTLLPTLIELATVGLVQRDIKTLQWMVYFFIFFDLVTDYKEAVALVETWRRNGLFAPLPDALEGAAAVMAKIGWTFAASFAFEFLTILCAVTALLLAANVRASASGGGGR
Ga0308415_10009124F032180AGGAMWWKIEEVPHQELEDWANAVGCFERAAKRDVAVRAAGAFVIYDLDGKLGYVAGREAPEGAYLVERWVRGKRGWTLYE
Ga0308415_10009125F005028AGGAGMRDDDLHAAMRFFAERLRGAEADETRLRRWTRHKLRNDAQAVAELMLTVGYRPTFIRYFLRYHIRAVDPETDSEDVVLVVADLHAAAKRLKQPYRDLAAVCLKWGYVHETVVQMLAKILERKQ
Ga0308415_10009128F004307AGGAMFKELINHNGNGRERPELNGAYIGRFLGVKERQRPTFETRNDPEPTFEDVFVFEFEVEDDDGNPLRVSKWVRKPTRLTHPSKNGKVTNLYRVLAALYGVAQMTDAQLERAEEFVENEAIGREYQLTLETKPSGWVEIVHIAPVRKARNRKKEEDEEVPF
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