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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031776 Open in IMG/M |
| Scaffold ID | Ga0308415_1001100 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11824 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (79.17%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 11 (100.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000642 | Metagenome / Metatranscriptome | 965 | Y |
| F000855 | Metagenome / Metatranscriptome | 859 | Y |
| F001381 | Metagenome / Metatranscriptome | 709 | Y |
| F002229 | Metagenome / Metatranscriptome | 580 | Y |
| F002372 | Metagenome / Metatranscriptome | 566 | Y |
| F002795 | Metagenome / Metatranscriptome | 529 | Y |
| F002978 | Metagenome / Metatranscriptome | 516 | Y |
| F004024 | Metagenome / Metatranscriptome | 456 | N |
| F054900 | Metagenome / Metatranscriptome | 139 | Y |
| F066811 | Metagenome / Metatranscriptome | 126 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308415_100110011 | F002372 | AGGGGG | MPTRKEDALWSVVHQRSAHLRALLDGLDGVDVSIAYELDYYPYAIVDLLLMREDAPPVVVRSVYVQANRQWEYHSEYALRVVEAALQLVEEYRADPSVCGAVGV |
| Ga0308415_100110012 | F002795 | GGAGG | MATNSGLTLRGMVASYREFVSRTSGKLYRVITVYGDLVVGETVLCAVDGYDVFVDAPGYARGELVELPARLQFVRDSSGRPAVRLYVDEGVR |
| Ga0308415_100110014 | F002229 | GGAGG | MVTLLTVDGVEEVDYAPSDVEIRDALGDRGLYGIVLDDDVTWIRLSSGLGWWTIVHGRRVTATVAPVGWCWVADGCGDRGYWSPSLACIPGEVRALCGSCGAEYVED |
| Ga0308415_100110016 | F004024 | AGGAGG | MHSERDYVRQPSSLNDDDMMFLDARATLAAALARAVVGYSDSRVRALAWLSIAAPRLYERIAPIIEASAIRQSPGASRTLRDALRALSLEEYVRRRDERRSDR |
| Ga0308415_100110017 | F000642 | AGGA | MQEMSIALALCAVGAAIWYMRRREASGRVRGWLLLYDDLGGWRALPAVYGDSGVVADGVTYPASLPVVRAGRELLWIARCESAALIDHQALERAREAAALSSLWRGGGQWLDFLRIVGVVLPAAFAYFTWAQVSALQGLVAQILALVGER |
| Ga0308415_100110018 | F001381 | GAG | MQYVIATLYVLLWLALAALAALVLPRWALPVALVQLAIAYVVVRSSLLGAVDADDER |
| Ga0308415_100110019 | F000855 | GAGG | MDWLEDFWSKVVSWFDQISAAVHNGIIEWVNSLIQIWNGWMDSLLHPARAMPSVPALRWIVGWLANIVDYTTLMYMLVDYVAYAWIVRQLLVAQLTIVVVGLGFRAWLVIRRVVLVS |
| Ga0308415_10011002 | F002978 | GAGG | VSVRDWRVTLKPWADRRLWFVQARCGGRVVWGVVYDADDPDSVSLARRAVATLRAAGADCSALPGALPGVGQKP |
| Ga0308415_100110023 | F054900 | AGGAG | MCLTISGDCASIGAMEYERAMLQLMVYGVTLLMVYVVDRWCRG |
| Ga0308415_10011007 | F066811 | AGGAGG | MEFNNQPVFNAPSMTDILNAATSIFNPFVSVIALAIGVTLGARMLGRIVRLF |
| Ga0308415_10011008 | F054900 | AGGAG | MCLTISGDCASIGAMEYERAMLQLMVYGVTLFMLYVVDRWYRG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |