NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308415_1002549

Scaffold Ga0308415_1002549


Overview

Basic Information
Taxon OID3300031776 Open in IMG/M
Scaffold IDGa0308415_1002549 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7342
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013092Metagenome / Metatranscriptome274N
F022362Metagenome / Metatranscriptome214N
F070715Metagenome / Metatranscriptome122N
F097406Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0308415_10025492F097406N/AMYESRLFHDHCHYGIIAAAIANAFRGSESPTIRVEDIFPDVVEYLERFGVRGDNELPLLSKDDLKSWLVQQKSERVARASS
Ga0308415_10025493F070715GAGGMRHRFTDEHGREYEVARISFARYHDLRDHGFDLAKWASEALARVVRPDITTDNAQSQRFDYEEFVRILADGAVFRDRKTAEALLTVLCRDSLSRHGVTANEVFESLYGRSIWEAEVAFISRILDFFEGHPIMREILGAALKLLLSKVEASTATSSPTSGTSPATSA
Ga0308415_10025496F022362GGAMIANLLDAVVDALNGPPPAASVAASKTWAHYWVLARETPDVCVVTFVRSERERLSRSRFRFLLDVEIVRARPYVDASSIEIVVNDVHSIASRLTNQEVLERGGIAYAFDSISFSDPLYEIEEVFDESSFVRASITARYAVLEPL
Ga0308415_10025498F013092GAGMNAILDDFFKTLLRSRGVRLRLPNGFEIDAVVARRDSQSVSLGGQVAADTTTQCFVVRASDLPPGYWPRVADEIVNVATSQRYIVVRAIGGAHATTSSDPYGFLVRVWTRLAS

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