NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308415_1003422

Scaffold Ga0308415_1003422


Overview

Basic Information
Taxon OID3300031776 Open in IMG/M
Scaffold IDGa0308415_1003422 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6196
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F001381Metagenome / Metatranscriptome709Y
F002372Metagenome / Metatranscriptome566Y
F002978Metagenome / Metatranscriptome516Y
F066811Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0308415_100342210F002372AGGGGGMPTRREDALWSVVHRRSSHLRALLDSLDDIDVGVTYELDYYPYAIVELLRVREDAPPLVLRSAYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAE
Ga0308415_10034222F002978GAGGVRSVRDWRVTLVPWADRRLWFLQARRGRRVVWGVVYDAADPDSVALARRAIATLRAAGADCSSLPAVLPGVGQEP
Ga0308415_10034223F000642GAGGVQEISIALAICAVGAAVWYMRRRDVGAGRVRGWLLLYDAVGGWRVLPAVYGDSGVVADGVTYPASLPAVRAGRELIWIARCDAAALIEHQALERAREAAALASLWRGGGQWLDFLRVAGVVLPAVFAYFTWAQVSALQSLVAQILALVGER
Ga0308415_10034224F001381GAGMQYVIATLYVLCWLALAAAAALVLPLWALPAALVQLAVVYVMLRSWLTAAVGGDD
Ga0308415_10034227F066811AGGAGGMQFNNPPAFTAPSMTDILNAATSIFNPFVSVLALAIGVTLGARMLGRIVNLF
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