NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308415_1003745

Scaffold Ga0308415_1003745


Overview

Basic Information
Taxon OID3300031776 Open in IMG/M
Scaffold IDGa0308415_1003745 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5881
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005631Metagenome / Metatranscriptome394N
F010840Metagenome / Metatranscriptome298Y
F016404Metagenome / Metatranscriptome247N
F051735Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0308415_10037451F005631GGAGMRVNVSVDLDNALRKLLPRTARIEAALDAGAAAAHGVMQIYPPPPAGSRYRRTGNLRQKLRIKKLSRTSRIVENTASYARYVYGMPQARVHRGRWASVRDAAEAAKKEALAVLKG
Ga0308415_10037454F016404GGAMTVDELLTDESRAAVLRALLMIALDEGVPASARVAAARLFLSQFEEQPNADQSVLVIVDDAAFVKTV
Ga0308415_10037455F010840AGGAGGVNLPFSQPLDKITFGALAAATVIILTWALREFAGIELPPEVQAALAVIIGCVVSYHVPLSKFEAEAIARKYYRNCK
Ga0308415_10037456F051735AGGAGGMFQDVTIINGPVQKNGVSDYERVRIKARPLGRPYAWDNGSPWNDYTTNGGFILVFECEDGAVYVQEIEWEVDPYPAADPSPRTYYYYERYDSLDEARAGWRGWLIEQALRD
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