NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308415_1005360

Scaffold Ga0308415_1005360


Overview

Basic Information
Taxon OID3300031776 Open in IMG/M
Scaffold IDGa0308415_1005360 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4704
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022604Metagenome / Metatranscriptome213N
F025421Metagenome / Metatranscriptome201Y
F038570Metagenome / Metatranscriptome165N
F042758Metagenome / Metatranscriptome157N
F093039Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0308415_10053602F042758AGGAGGMKPTDFLNIAGRLPAQAITGATETTSVDMQLLRGVAAVCIVGTATTPPSFAIQSSADNSTFTNLAGKSIASIPANSEAVINIRDEELPDGHRWIRAVVNGNATVAVLFIGTLARDNPPAKLTTTTIVS
Ga0308415_10053604F022604GAGGMLSAVNAVHAVVAAVPGIVAAYTTVPISVTTATLPMALVTPVGENRRQHAHELVRIETLVRVRIVHSPIAQGVTEAQQSALYTLADDVMTKITDDITLGGQVDHVASVDADEPSIYTLAGTDYLSISVVARVVEKI
Ga0308415_10053606F038570AGGAGMPATHLRRVQLGQQTAFATPVAATSILRGVRDGSVTINHNDAVVEELGRTVSDLVIVSQRHAEGELDIQCTYEDILYGLFGLFGPVAPSGGARTFNAPVVAYSAPQIYTIEYGATGAEYRVVGGLIREWTLRYEANAGVSESWAFIGRAVQANALTGSLPTRIVTPVLSRHASWFVDNVGTAHGTTQIPGTVIEAELSINTNRHLKMFEGSQPLDWGEGRWEAQLSITAEFNATAKAWVDALLADQVARNIRVNFVETSSTRELRIDFVGLIAESPELFGDRDGNMTVEMTFRALVAAPLNNWLQIRVVNGVTTLP
Ga0308415_10053607F025421N/AMIDLTKVRRIDRNAPGSFMEYARLQTVIAEGDLMAIARALEVYGVDVQALSFNELVDVVKHIAGEPSPLPVTSATE
Ga0308415_10053608F093039GAGVTLLLYLAETWGVAPWVLERELSLFWAEAACEYEREKVRRMKREIRRYGRR
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