NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308415_1007154

Scaffold Ga0308415_1007154


Overview

Basic Information
Taxon OID3300031776 Open in IMG/M
Scaffold IDGa0308415_1007154 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3934
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007033Metagenome / Metatranscriptome359Y
F024322Metagenome / Metatranscriptome206N
F038584Metagenome / Metatranscriptome165Y
F044249Metagenome / Metatranscriptome154N
F076976Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0308415_10071542F007033GAGMQCRCSQPLWALGIPDCYPVLRPIVRAAFETVLESSSNPNDFNLLTSTRYPNARRLLSPTLYNVESERPEPVFEELSGTKFFVRHQPRAFKALLPKLPTEWGINVEQFRCVSRLGVFLIDSEGVVWGRRVGVSAAAPLPVEPGTVQIRLLFPSDTTITKYEFSFDFAQSLMDFELVPVYANKELTNYVPLIAARILPSWSAPILRAFVFALYARGAGDPNIPISGLATHLEVRNNTNTLITTTFTEVAPGVYESDPLTLSASGNPYTIRVGASAPAGAFDYTTAVAQFSV
Ga0308415_10071543F024322N/AMSLLRKLRDARQWRYLRLVDPVLQQFEFCPVWANYLTPPSPVQVDTSVGTLTIQTGLVRSFAREYDVSTYAFPFSAEERVAFHPPQIFVAHYNEFSQIAARQQDAFLAVIPDARIGKSEWGEVEHEAFFFAPALDTEEFEVQLDRIAGVRESLLELWPKMVSITEIVPKFSRRAEWGTGEKLVKGEWIAIRLTINLKDYELNAV
Ga0308415_10071544F044249GGCGGMTKRDALLALLGASLTIVAKKYVAVLAALIVLGSLANFLGWVHAIISGEGCKAVKVLQGTARLVFYLIFYLALLVALEQIASYFIPPLLSVAIIYEASLALRKAVQLNIIPAGLVQQLTKVFRHEPPEKAP
Ga0308415_10071546F038584N/AMTEEIKQIQKAGEELLATLHASAATEEETKTLDAISKAAAHIRQQLRERMPTAGTRIKVSDLRSARKLMQRYVQKTFVGTQTPREYIGEAFYVTRQLVIEFVQDYLRTETLDVLAEITQVRLNSFTGGPGIVGEGVEKPTMYTSPQRVTSNYQKIAFTDLITDEVLLAFPNIVEFLIWHGAYRLEVFLHNALITLLSSIASAATLPTGIISPQVADLLIYMRAFHDQQSAISRRGEWIANAAIVPFPYYWTLVFGALKSTTGEYLQLDRQLQGLTLIPAGAAQTAPTVVFNENELEVFFLGDITVNFGRVLDAASDTNVRRLSMDLFYAPLPHAGRPVLVANTQTAINSMAQ
Ga0308415_10071547F076976N/ATREDGVYVIEELAVLEASLTPRPAQPNSELVLLMKTLTDMATENEKAPQEAASGQVAQKVATTPSALGFLRKQDLAQLEAFVNELAARVEALETLQAQVADLQQRVADLAAAVSQIQGMTQEAVAQSVEKALKAVEEQVQPLAKELAKTMLLVSEALKKTNTQRI
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