NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308415_1008497

Scaffold Ga0308415_1008497


Overview

Basic Information
Taxon OID3300031776 Open in IMG/M
Scaffold IDGa0308415_1008497 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3524
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F008499Metagenome / Metatranscriptome332Y

Sequences

Protein IDFamilyRBSSequence
Ga0308415_10084972F005028AGGAGMRDDDLHAAMRFFAERLRGAEADETRLRRWTRHKLRNDARAVAELMLMVGYRPTFIRYFLRYHIRAVDPENDSEDVILVVADLHAAAKRLKQPYRDLAAVCLKWGYVHETVVQMLAKILERKQ
Ga0308415_10084974F008499GGAMKKSRSEPRWKRKEREALKALQALFGRVSDPSLSRLLTPTGRVGHLTRFGVDGFVGNNPGFAVEVKARKRMLTKPTIDALLQTVDRAARFERIPLFVLVLGDDVPTRTENGARVDREWVMMPRRVLDELVGKERKDE
Ga0308415_10084975F004307AGGAGMFKELIHNGSRSERPELNGAYTAIFRGVSQRQRPTFETRNDPEPTFEDVFVFEFEVVDADFDEPIRVSKWVRKPKRLTHPNGGKVTNLYKTLAALYGVVQMSDAQLENAEEFVEKEAIGRQYQLTLETKPSGWVEIVHIAPVRKARNRKKEEDEEVPF
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Institute for Fundamental Biomedical Research
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