NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308415_1020758

Scaffold Ga0308415_1020758


Overview

Basic Information
Taxon OID3300031776 Open in IMG/M
Scaffold IDGa0308415_1020758 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1902
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y
F011940Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0308415_10207581F011940N/APTLTRTPSPTWTALPTATRDPYQPPSAVPRYTLVPITPPPDGNDMSWDGSLVGDLFDGLEALRRAVAPPAARICDLPAPVLADAPELHGMRDAFPDFVAGLCAFFGVASPVFGFVRLPVTLMVIGFAFWTAWRVFRSLS
Ga0308415_10207582F000855GAGGMDWLEDFWSKVVGWLDELSAAVHNGIIEWVNSLINVWNGWMDSLLHPAQAMPSNPALRWIVDWLGGIADYTRLMYLLVDYVAYAAIVQQALTAQIGIVIVGLGFRAWLVIRRVVLVS
Ga0308415_10207583F001381GAGMQYVIATLYVLLWFSLAALATLVLPLWALPAALVHLAVAYVMLRSWLTAAAGGDDGA
Ga0308415_10207584F000642GGTGGMQEISIALAICAVGAAVWYMRRRDVGAGRVRGWLIVYDDLGGWRALPAVYADSGVVADGVTYPASLPVVRVDRTLVWIARCDAAALIEHQALERAREAAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWSQVAALQALVAQILALVGER
Ga0308415_10207585F002978AGGVSNLRDWRVMLVPWADRRLWFIQARRGRRVVWGVVYDAADPDSVALARRAIATLRSAGADCSALPAVLPGVGQEP
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