NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318543_10024243

Scaffold Ga0318543_10024243


Overview

Basic Information
Taxon OID3300031777 Open in IMG/M
Scaffold IDGa0318543_10024243 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2301
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019697Metagenome228Y
F024260Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0318543_100242431F019697N/AELKLLLIEINVLRVEVQQLRAMEQDARKTEEFLSASVKRVMASRDHWRREAERLHALVAQVPPWSLFWQHCVDAFKAWRKPTDRALHCAKGLVSL
Ga0318543_100242434F024260GAGGVSRQQSDSADNRLDTTSQNGAETPATKPTSEGKKHWLDYATAFLTLAAAGGAITAAVFTGWQATTADQGLRDSNRAYVHSTNFRFVHYGAKNENGRTQWLVSPLIENTGSTGTRGMLMNTMISSAGEADFASLEKSAFSPALILPKSELTGAVVSMDGLGLDLLRGGGLITMGIIEYAD
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