NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318547_10023542

Scaffold Ga0318547_10023542


Overview

Basic Information
Taxon OID3300031781 Open in IMG/M
Scaffold IDGa0318547_10023542 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3075
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004504Metagenome / Metatranscriptome435Y
F005602Metagenome / Metatranscriptome395Y

Sequences

Protein IDFamilyRBSSequence
Ga0318547_100235421F004504N/ARVSLGLEDNFADGIIARRIVELAKAGERNPNLLREGALEELRGQLYGD
Ga0318547_100235426F005602N/AVLNVAANRELRGREMVNVLIGFGLLLIILIAAAFLAYYFFPAAFPVFWRHTHVPNQGVIKRDWVATGRIDFSASITKVTSNPEDYDQPTEFKLLVEERRIVESLAGNENLEVQWRLATLREAKAVVTQYHKYLSDHSLIKTVSDETASSGRMEREKEPI
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