NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318547_10225000

Scaffold Ga0318547_10225000


Overview

Basic Information
Taxon OID3300031781 Open in IMG/M
Scaffold IDGa0318547_10225000 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1126
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008629Metagenome / Metatranscriptome330Y
F081980Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0318547_102250001F008629N/AFWIEGPNWSASFAGMVQEGALLEVSGVVYALHHPAGQPDTASWDADFGYLVFGGIAPVVDGEWTNYEPAPTAYPTPPRSSCWPDAPTRVPQFLQYLAGYGIGLNAYSLQPGYLIRSYSNMALPTTINPKTWTCRSSQEPQPGQGAGSQVLKWFEQQNG
Ga0318547_102250002F081980AGGAGGVATWRGSVTPAGPARSGQRFSWRFNWRGLLWTAALVLAAVAVPVVIMPLGDAGTTAARASSCGKAVGPFTVHGTKVLAKNGSVFISYGMTVSGLQEGNWTQLIPLDLAKIAATANDWCANTVRIQVNQDLLLGPNGTSFNPEYMAAIESEVSLAESYH
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