NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308418_1000712

Scaffold Ga0308418_1000712


Overview

Basic Information
Taxon OID3300031783 Open in IMG/M
Scaffold IDGa0308418_1000712 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090729_R4cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18495
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (95.65%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005028Metagenome / Metatranscriptome414Y
F006252Metagenome / Metatranscriptome377Y
F007404Metagenome / Metatranscriptome351Y
F008499Metagenome / Metatranscriptome332Y
F012577Metagenome / Metatranscriptome279Y
F014738Metagenome / Metatranscriptome260Y
F018115Metagenome / Metatranscriptome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0308418_100071212F006252AGGGGGVRSFDEQAAFGLPYERLIAQAAALLLYPQRLDLTLVRLDAYAPLDFLIVDGERPVAALEVKRRSVRSDAYRTTILPQSVVDAARRLTIPVYAAILFTDGLAVFDVLRTPSTARWLRTRRGALRKHREYDISERLVKVEEVHQRQRRSA
Ga0308418_100071216F008499GGAMKSRSKSEPRWKRKERDALRALQATFGRVSDPSLARLLTPTGRVGHLTRFGVDGFVGNDPGYAVEVKARKHMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERVDE
Ga0308418_100071217F018115AGGAGMSDEEERFVRWYAHLAADAPLDRHAARALLRRALADREALAEYLLNSECAPSLLGEFIYRHWNDALSDAARGASLRLALRTLRALDGLEERDRWAVLEWMQRGVVPSTRILCRLCEEIDD
Ga0308418_100071218F005028AGGAGMRDDDLRAAMSFFAARLRGAELDETRLLRWTRHKLRNDAQAVAELMLTVGYRPTFLRYFLRYHIPALNESAAVGERYIDPGAAPEARLGLCWRLDDAVLTVYTDLHAAAKRLKQPYRDLAAVCLRWGYVHETVVQMLAKALERKPRNVVED
Ga0308418_10007123F012577AGGAGGMLVAIAEPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPGYARSGVMTQIGDELIVYCTQLSRTVWRGQIERIEEARDGSITWHALGFGALQREARISVVQNVFTTTKWKPVSSGFMPNSGYNSRPDLWEYEFIPGNLFISIRIVTKRTFTISNSTLFFVAYLYAQPERYATITSNERLYVGVTTTGLATGVWVAPVTAIPQPNTYTLTLGAFSSINNEGVITASTCYGWVVGVRASGNETTVGATSVAFLARINDPGAGGINAELLSTALIARGGCCDIYLPSQTIVDIENPNANLREIIEHVRTDYSSVRYHLKRFLRDRPRPVIDLRSDSTLVWRFPETPRVVDISKAPSRIFAQYRGYWTDHLTATTTIQSLESRRRLARRVAGVGEYGSKTTADARRDEAAIALDRQIAPITVELDNSRYELITREGVAVPNWAADVSDYAIVPGYFRNAKITARTITRERTTYTVSFNPDDFVTVLR
Ga0308418_10007126F007404AGGAGMDIIEIFRLLAAGHSGLTALDYVWNAVFGAIGAATAYLADTNGEVFLPRYDKEQHSVELGALGRVLVGAGAGTLVGYSGYVPFIAGVVAPTLLPALIDKIAWFVERRRR
Ga0308418_10007127F014738GGAGGMKLDVLLLISAFALAFVHPDAAQVAATAVVLLLVTRIERGRRARKKKSAPVAH
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