NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308418_1001259

Scaffold Ga0308418_1001259


Overview

Basic Information
Taxon OID3300031783 Open in IMG/M
Scaffold IDGa0308418_1001259 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090729_R4cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13649
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (37.50%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021427Metagenome / Metatranscriptome219Y
F028057Metagenome192N
F032563Metagenome / Metatranscriptome179Y
F042064Metagenome159Y
F046061Metagenome152N
F070747Metagenome / Metatranscriptome122Y
F078076Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0308418_100125911F042064N/AMNSIVRHYLAHALEDTNRLAKRLNRGSMLPVVAMWQEGHRLVIASCDNYQQHEFRLFIFRDDPGFPPLLHERVLAFSPAAIAAAARAFYEQLGENDLLHIDYDDDQTTVALTAPGITISLKATESLHRDHIRRFAATFTDTERPDVIKVNAKELLTALPKPRRNNERIYMFVHFHECTWQVGVQSKLNSWQPTEHNGVFDAQDVQGTPGCKLNVQMLREALEIAERYHPFSECTIALTKRNEAVLVQAVVGKVLDFRAYIMPVVNLQP
Ga0308418_100125915F046061N/AMSETIFESLQAMFPPGTPLEFAMDDIRIEGIRPLCVATYSDGTIIVCAFWNADRRKMWAWYDGDKWQVSEQRPSIVDRIKPRQR
Ga0308418_100125921F032563N/AMVMSKEQMTDKRLMELFAAYKQSTDLIVKIWEQDIRGYTGTDYIFEIERQYPGCILTVREVKRRLEQMKIPIYAIYVGARSNVILIEIKADKKKAEKINRRLKAEIPTSGWLIVEHEHQEDGTEEQRSQVKSA
Ga0308418_100125922F070747GAGMEQRNNARKLNQLSARIALLDQKRKEALEQLVNQFCDLYGIAKSRRIDVMETEEKCRGAICAVLFAVNELSKRGIAVKRVYWDKYGGLLISLSDPKLNEVKIDEEIKKLAKQRKKQNCGWFIV
Ga0308418_10012594F028057N/AMNKLNTNQKRRLARAISRAASAELAARQAQLRLVRAERRVVAEEFEALRRIAIIISLPFLFLLCAIFSSFWFILLAEAIIKSSR
Ga0308418_10012598F021427N/AMSESTDLPLFVDESFGITVDPGAWRSHGLWHALCNYLDLLDSRYAGIARIMVDNILSIMRADFMRDTRESKLQRDVFDYRQRLLRKYAPMAHRPESFIV
Ga0308418_10012599F078076N/AMYKLSSSLYDRIRLEEVARAKVREYLRDADIPVWQIDPVELARRVIARENLVLTTDDPDKAKTCYMDQCRRVHAELLCNAIKAHRGRDVEHVRPVRLLLISPESLEDLSDVDDDFTDGYWGDENPDGDLLLSPTSCFGRTRLAIALDAGAKVVHGYEFAYPRSVSNDPLPRGWCGYRTAREGYALQREVAEIVWAASVMKAIKEKNGDLTYVISHCKCI
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