NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308418_1002299

Scaffold Ga0308418_1002299


Overview

Basic Information
Taxon OID3300031783 Open in IMG/M
Scaffold IDGa0308418_1002299 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090729_R4cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9382
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F005302Metagenome / Metatranscriptome405Y
F005631Metagenome / Metatranscriptome394N
F105262Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0308418_10022993F005631GGAGMRVSVSVDLDNALRKLLPRAARIEAALDAGAAAAHSVMQIYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARFVYGMPQARVHSGRWASVRDAAEAALKEALAVLKERGR
Ga0308418_10022996F105262AGGAGGMLVQETIQPLLRFFNANVTAPADTSVISIANAQAVRIVAHTGTVTGTASLQVHVNDTNNTNNSEQLTDKAIASLVSNRTYEIFVTGAEAYAAKTHASHMFVRIAGTGTAQIAIEISAFPGRDIPATLPTGWTRVL
Ga0308418_10022998F002970GGAGMSYSAVTDIIELLAGLAVQYNSAVVPVRRLATQPNWSDAAQLPVRIIPTLGGLRLIEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALVDYIEDYVAQLRFAWLTRGDVQLVNVSGIVDVVRYGERAYEGVVMTTRFAHLIRAPSA
Ga0308418_10022999F005302AGGAGGMSHSGVIEGLFAGNFAVEISTNATTWTAVSNATVKIDDVELSRPSGEAYVGGSSDYATITVGKREPVELTLTFLYDEAANSAANTIFDRFQSATPTLGVRWSPRGLVGSARAYGTSNDGGTTFGLGVITGVTLSALDPSDAEPYVAMVTVRTPSIRQYTLAASNPTNLNPAS
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