NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308418_1003012

Scaffold Ga0308418_1003012


Overview

Basic Information
Taxon OID3300031783 Open in IMG/M
Scaffold IDGa0308418_1003012 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090729_R4cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7958
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F006252Metagenome / Metatranscriptome377Y
F018115Metagenome / Metatranscriptome236Y
F019420Metagenome / Metatranscriptome229Y
F076715Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0308418_100301211F076715GAGGMWWKIEPIPHQELEDWERALVRCENRAKRDPMSRAVGVFVIFVREGGTRPEYTPGDKAPDGAYLVGKWTLKKKGWMWYD
Ga0308418_10030122F019420AGGGGGMATYRDVMFWSGATDGDCEATVIRTRLLGMVIELGDEETRTPDTMTAFYEADGGGIIVYEVECWEADGRMTARWQRVASLEDVRRRYAAYLERLEL
Ga0308418_10030123F006252GAGMKSFDEQAAFGLPYERLIAQTAALLLYPHRLDLALVRLDAYAPLDFLIVDGERPVAALEVKRRSVRSDTYRTTILPQSVVDAARRLTVPTYAAILFLDGLAVFDVLRTPSTARWLRTRRGALRKHREYDISERLVKVEEVHQRQRRSA
Ga0308418_10030126F004307AGGAMFKELINHNGNGRERPHLNGAYTGTFLGVKERQRATFETRNAPEQVMEDVFVFEFEVEDDDGNPLRVSKWVRKPARLSHPGKSGKVTNLYRVLAALYGVAQMTDAQLERAEEFVQEAVGREYQLTIETKPSGWCEIVHIAPVRARRKEKPIDEVPF
Ga0308418_10030128F018115AGGAGMSDEAERFVRWYAHLAEDASLDRHATRALLRRALADREALAEYLLEQCTPALLGEFINRHWNDAISDAPSSAALRLASAVMRALGRIEDEHDRRAAEWWFQLGLVPSVRVLRQLCVRINDAR
Ga0308418_10030129F005028GAGGMRDDDLRAASQFFAERLRDAEMDETRLLRWTRHKLRSDAQVVAELMLTVGYRPTFLRYFLRYHIPTINESAAVGETYADPGAAAEAHLGLCWRLDEDVLTVYSDLHAAAKRLRQPYRDLAAVCLRWGYVHETVVQMLARVLERK
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