NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308418_1003792

Scaffold Ga0308418_1003792


Overview

Basic Information
Taxon OID3300031783 Open in IMG/M
Scaffold IDGa0308418_1003792 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090729_R4cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6830
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F004791Metagenome / Metatranscriptome423Y
F012577Metagenome / Metatranscriptome279Y
F037517Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0308418_10037922F002970GGAGMSSSSVIDIIELLAGLAVQYNSAVVPVRRLTTQPNWSDAAQLPVRIIPTLGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALVDYIEDYVARLRFAWYVRGDVQLLNVSGIVDVVRYGERAYEGVAMTTRFAHLIRAPSS
Ga0308418_10037924F004791AGGAGGMTTPATIYDVDAIYVDRNALLIRDAATLLNRELTPETIARLVRRAIGNQADLFPIRALRRVYERVLPQIFEPDAAIRARVEGLRPNVATITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDILNEPYAAAALLLKKIFDTVGDEGNE
Ga0308418_10037927F037517GGAGGMRIRQIGTLVFDANTNIVVDETNQDAPGIGFRANSLNDPQPFSIEIAFRRATRAQALNAMNAFARELHSYAQRRRGNLTAVAGGALVVVEDANGGTSLRSYLRDGAVTLLSVEATSTGFLARVRVTGTLISTFVDYTYVSTAVTLLRPYERRAVTLVGSNDAYLYKNGINQTFINMPGLYNALLAVEELESATGTSRIQAINPASVSSGITTQSWNAGWATLTRANFSSATSGTITYTIPTSPRDIYRLFIEIYCPTTPPSTARYIVSWDGQPQVAETISGDRSWYTPALIALDTVSFPLTLEIQSVPTGTLVMPIVLLPTDGVYVFNIISPSTLTGYRAAVSQAVGEPPFRVFPSGTVYGPPGFISSRHIAVFNGAMSPSLSGAVAEVGVYSYRIEPAAFA
Ga0308418_10037928F012577AGGAGMLVAITRPHQQFPVPLTAADYEFSTSDDGDERGRVTLPPGYARSGVMTQIGDELIVYCTQLSKTIWRGQIERIEEARDGSITWHALGFGALQRDARISVVRNMSDMTRWQPVGAGFMAGSGYDSRGDLWEHELVSYSGYVLVHIRTKKTFTISDTTLFFIAYLFDRPQHYYKIENIERIFVYESSSGLASGVWVAPVVTVVQTTTYQLALGTFNSINTSGSVIAGNCFGWVIGVRASGDETTVGLTSVWVRAEINNLTSGAIDETLLSTALLERGGCCTIHLPANTKASITKPDANVRDIIENAEDTTTRYHIKRFLRDRPRPTIDFRTDSPLVWRFPETTRVVDISKAPNRVYAQYPGYLADYLTAPTTIQSLETRRHLAKRFASVGAYDNTSIAETRRDEAAVALDRQIAPL
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