NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308418_1010486

Scaffold Ga0308418_1010486


Overview

Basic Information
Taxon OID3300031783 Open in IMG/M
Scaffold IDGa0308418_1010486 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090729_R4cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3291
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011548Metagenome / Metatranscriptome289Y
F020180Metagenome / Metatranscriptome225Y
F026891Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0308418_10104863F026891GGAGGMVIIAGDAVDTDREDGRLWWAQNGAKRTRLSLYTTQGVHIDRVYLPVYVARNAAPVWTSDERNREASVYLRLSEKERIYAIWLNSHCGFGVVPKDAVLWEASSVGGPKNSESKIAVLKPPCYIEEFTYKFATPSSWYAITLDGAVRRLGTRSNIVALALRGDKDAERLAELKGWLSELTKQLEVQDEL
Ga0308418_10104864F020180GGAGGMSYDAKRWYVARCRCMRPIIYQEGRGDYPLRCARCGGHVYTEPRPPHFERLTSTPIVDFRAILRVLGWCVLGLLGYILICVWFVVLGGL
Ga0308418_10104865F011548GGAGGMVVISGVELVQSDRLLWTAQRGSERLRLIADGGVRVRRVGERVYVAHALPMPATGTVRLMPTTKYREPYHLRIDDSYRFGVIPEDAHVWSDSIGGHYECGYAAAQMSIINPPAYVSIVRKRALVSQLRYLALLPDGEVRDMGTRHEVLLLAKTGEPLALQLTRLLGDYDDFLG
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