NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308418_1030120

Scaffold Ga0308418_1030120


Overview

Basic Information
Taxon OID3300031783 Open in IMG/M
Scaffold IDGa0308418_1030120 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090729_R4cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1489
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011398Metagenome / Metatranscriptome291N
F020181Metagenome / Metatranscriptome225N

Sequences

Protein IDFamilyRBSSequence
Ga0308418_10301201F011398N/AYYSTTYAIREVVTNTIIYKNPLGGNEDVVHANSPYARFRYVVEDYAGDRVVGVNTDARGEVTECALIERAVLERPVTIWRMTPSYDAMVYQSKHKRENLFKLSTYGDGTWVVFEPERLRPLYGQYTSLIAADLPAEQTWSFRFTYNASIPDFLSSQACRNNPDVRRGYPESLAKLLGDNFPGTVRIAKTYALLGNEYLTFAIVSSQPLDEVARLVTDRLGKTLNASLSPASVQIYGQRATRISLSRFLYQLNVEVIALDSQLTLVRGREVRFGGQSR
Ga0308418_10301202F020181GGAGGMKVLRSLFAAICVIALTTASVYAQENDPNWAVYNPPNPKVVYTWLDLDRSFPYGNANAILDADILLRLPTLYRRDYKPLPSGTRLPIHTAPDAQDLAKASWKAWRFGQFVADGIEVPTIEPWLRTRQLRTVTYRPLPTLHSGNSIPHRVDGLRYGKMRIPVLNYSPDMITGYPCPPGGEPREAAGELPRVWLEVGDPRATGAALVPDDPCVTQRAIDLA
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Institute for Fundamental Biomedical Research
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