NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315899_10000081

Scaffold Ga0315899_10000081


Overview

Basic Information
Taxon OID3300031784 Open in IMG/M
Scaffold IDGa0315899_10000081 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)118219
Total Scaffold Genes122 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (13.11%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F003038Metagenome / Metatranscriptome511Y
F004953Metagenome / Metatranscriptome417Y
F010462Metagenome / Metatranscriptome303Y
F022861Metagenome / Metatranscriptome212Y
F042298Metagenome / Metatranscriptome158Y
F078619Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0315899_1000008110F004953GAGMMLVQATWNDKQTFRMIPITESCPYVECIFDPDTKVFVVISKIKKTALHMLPKLDDYGQSITGTKGIKQERHKIEVFQEFYLEDMTAIEELIKIFSVNNKFDYKSFMTESEK
Ga0315899_1000008123F003038N/AMGLSTTDLGTGSGGSSAAKTIAPGNHTLKINSIALEDFQFIEGAKHLILNVETEPIEGFEGFMIDKDNPDAGHYAGQIGRVKASQYAYADGETKSGIKIQRDRSLLIFLQSFCKTLGINDWFVEQDGKHETIEDFINGFNKTAPFKDKYLEFCIAGKEYLNKNSYTSYDLWLPKADNRKYAFGEVEAGKVITFDESKHLKKLEIKDVNNFGDDDDFGTSSNSSSDFSLD
Ga0315899_1000008139F078619GGAMCHGFECPVKEKCKRFSAKPDEHWQAYFLEPPYEKTDTSFKCDYYWGDSAEAIWKELNDIMGIDLPE
Ga0315899_1000008142F042298N/AMGRMKEVYIQVLQANNGIPEDMTVGDFLRMTDLNIYHWQEYERAQERARLQSNKQTDLGEATENSEGKSIRREENS
Ga0315899_1000008144F022861AGTAGMKAICIDASNKPSKVSESEWLIEGQIYTITRVVRMGLQNNKFGVLLKEVKLSSESFPYELYDADRFIIIDELLKSEQEETILEKEVELNII
Ga0315899_1000008150F000716N/AMILNLMIMYKMEKLKQDVRNYQLQGGNTYMQYEQDRYSVYQNYLYKRALYGLNALTEQELATMCSKKKQRILNVYKRAQVVLNVAKQRATIEYTNFIFKTLFPKSAITDALLSMTETDDKFKNTLTFKDLNIGKDKIITIFIEEGILPKNFLSLQEAPVSLPRLKNEVKA
Ga0315899_1000008152F010462N/AMQVMLYQLPNGKVVHLTIEEYLSLTEEDIQYLMSIDYGEHIRDPFTGSAVETNTREKYIDTEFLPMEDYDLNDMPSDDLPFDDIIDLSDSLDN
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