NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315899_10001156

Scaffold Ga0315899_10001156


Overview

Basic Information
Taxon OID3300031784 Open in IMG/M
Scaffold IDGa0315899_10001156 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30438
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (87.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014237Metagenome264Y
F030002Metagenome / Metatranscriptome186Y
F031484Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0315899_1000115629F030002AGGAGGMAYRFTTPTISEGPAAEGRLFSRYRLTRGVSVLKVAGEYYEYRSPSSEEIAEAEVAYIGGYSYEVSPGEKAALEAAGYTVETI
Ga0315899_100011565F031484AGGAGMNKDKLIAVVTTYARAAVPSVVALYAAGVTDPKTLAYAFASAFIAPLWKALDPKAKEFGRGSKA
Ga0315899_100011567F014237AGGAMDTLKNVMMRILAVIAAEALGVIGAGSLVGIEVWQAAVLAGALGAARVLEALARFFLADGNLSAEEINAAFAKVDKKASE
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