NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315899_10003126

Scaffold Ga0315899_10003126


Overview

Basic Information
Taxon OID3300031784 Open in IMG/M
Scaffold IDGa0315899_10003126 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18036
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006660Metagenome367Y
F014737Metagenome / Metatranscriptome260Y
F043944Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0315899_100031264F014737GGAMTTINAVTSPSIRHAEFVKLSIGTLGSPTTVYAFCNAGAAITVDGTSYTNLGSLLGVGDVQRDIKATSDDMTVTLTGIDPANVALVLSANIKGSIVEIFRGFLDTNNQIITTPTQQFFKRYQGIISNVSINESFDIKLRTRIATCSISSSSMRRVLDNRLAGVITNQNSWQTFYPNDTSMNRVEVIQSTFFDFGAPVKQQTQTNASAE
Ga0315899_100031265F006660GGAGMSFQTIINIQQRMNVNNRRVVGQQVSRGGYVTTAQYLTAVPWVFTVQPHAFLYYPQVRDVIQSIDNADRQNPQNITFNTDTLSWFTAYQGNLTTGQANALTLSAVPAANSQTISVGNLPSVGSTVIIFKAGDFLQLGSYVYKVTAEVLRGATSTVSVNLHRPVIGTPTVGTLTAVGSAVVFPVVAEVCPTYTLNPMTNGAFVEWTGEFVFREYII
Ga0315899_100031267F043944N/AMIFNGHTHDSLADIDDITMAQIQTMYADGLIGNRGTLEVLGSLTAGVFNYMRQANSRPYKLANILGSAYDYIYPPQSEQDKKAAVNNSLLAFMTQAPDFKQDRFKHG
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