NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315899_10007449

Scaffold Ga0315899_10007449


Overview

Basic Information
Taxon OID3300031784 Open in IMG/M
Scaffold IDGa0315899_10007449 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11746
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (16.13%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002303Metagenome / Metatranscriptome573Y
F011392Metagenome / Metatranscriptome291Y
F047046Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0315899_1000744914F047046N/AMNKIEELKSVIGKEVSENRSPTCRAKLIRVNKNTCTFEVVKSPYRSGDESRIGERYLVPISWSWNAFFF
Ga0315899_1000744915F011392N/AMNLSIKELNELIYSLGITAHNGNFCNREINESLLEKLYYELNSRIAEEAIDEEVESSTYYVSNEEADEDYRVSMLQDAQRYESSVEKDYDNHLNKLKQRGYITQALLDYVDNRGAVSHGDLERYYKILTGGSNSFSHILNNLRTPYKNRKTQRYIAKEGKRYSDAKYVIKVANPSNWVVA
Ga0315899_1000744917F002303N/AMDIREQCRERAIEFAKEWGYENVSNHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLSMSRADTECRNNIFLLTMCNMNCYL
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